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DU502_RS15640 archaea-specific SMC-related protein [ Haloplanus aerogenes ]

Gene ID: 38472748, updated on 24-Oct-2024

Summary

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Gene symbol
DU502_RS15640
Gene description
archaea-specific SMC-related protein
Locus tag
DU502_RS15640
Gene type
protein coding
Organism
Haloplanus aerogenes (strain: JCM 16430, type-material: type strain of Haloplanus aerogenes)
Lineage
Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloferacaceae; Haloplanus
Old locus tag
DU502_15640
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Genomic context

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NZ_CP034145.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene rod-determining factor RdfA Neighboring gene hypothetical protein Neighboring gene BCCT family transporter Neighboring gene NAD-binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP034145.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Form and function of archaeal genomes. Bell SD. Biochem Soc Trans, 2022 Dec 16. PMID 36511238, Free PMC Article
  2. A novel structural maintenance of chromosomes (SMC)-related protein family specific to Archaea. Yoshinaga M, et al. Front Microbiol, 2022. PMID 35992648, Free PMC Article
  3. A 71-kDa protein from Halobacterium salinarium belongs to a ubiquitous P-loop ATPase superfamily with head-rod-tail structure. Ruepp A, et al. Arch Microbiol, 1998 Jan. PMID 9396829
  4. Cell cycle-dependent expression of an essential SMC-like protein and dynamic chromosome localization in the archaeon Halobacterium salinarum. Herrmann U, et al. Mol Microbiol, 2002 Oct. PMID 12406217
  5. Physical and Functional Compartmentalization of Archaeal Chromosomes. Takemata N, et al. Cell, 2019 Sep 19. PMID 31539494, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
archaea-specific SMC-related protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP034145.1 Reference assembly

    Range
    3053614..3055551
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_121921678.1 archaea-specific SMC-related protein [Haloplanus aerogenes]

    UniProtKB/TrEMBL
    A0A3M0CU79
    Conserved Domains (1) summary
    PRK02224
    Location:177 → 504
    PRK02224; DNA double-strand break repair Rad50 ATPase
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases