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AB124611 cDNA sequence AB124611 [ Mus musculus (house mouse) ]

Gene ID: 382062, updated on 2-Nov-2024

Summary

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Official Symbol
AB124611provided by MGI
Official Full Name
cDNA sequence AB124611provided by MGI
Primary source
MGI:MGI:3043001
See related
Ensembl:ENSMUSG00000057191 AllianceGenome:MGI:3043001
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1706
Summary
Predicted to be located in membrane. Is expressed in gut; lung; and male reproductive gland or organ. Orthologous to human C19orf38 (chromosome 19 open reading frame 38). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in spleen adult (RPKM 26.7), mammary gland adult (RPKM 7.9) and 9 other tissues See more
Orthologs
human all
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Genomic context

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See AB124611 in Genome Data Viewer
Location:
9 A3; 9 7.82 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (21437410..21456629)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (21526114..21545333)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene dynamin 2 Neighboring gene predicted gene, 57796 Neighboring gene microRNA 199a-1 Neighboring gene STARR-positive B cell enhancer ABC_E8279 Neighboring gene transmembrane p24 trafficking protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E11402 Neighboring gene STARR-positive B cell enhancer mm9_chr9:21350851-21351152 Neighboring gene STARR-seq mESC enhancer starr_23505 Neighboring gene coactivator-associated arginine methyltransferase 1 Neighboring gene predicted gene, 39303 Neighboring gene Yip1 domain family, member 2 Neighboring gene translocase of inner mitochondrial membrane 29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The genetic program of hematopoietic stem cells. Phillips RL, et al. Science, 2000 Jun 2. PMID 10834841
  2. Fancd2 in vivo interaction network reveals a non-canonical role in mitochondrial function. Zhang T, et al. Sci Rep, 2017 Apr 5. PMID 28378742, Free PMC Article
  3. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  4. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
  5. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (3) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein HIDE1
Names
HIDE1
highly expressed in immature dendritic cell transcript 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001198794.2 → NP_001185723.2  protein HIDE1 isoform 1 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
    Source sequence(s)
    AC163748
    Consensus CDS
    CCDS57661.1
    UniProtKB/Swiss-Prot
    Q75VT7, Q75VT8
    UniProtKB/TrEMBL
    A0A0B4J1G2
    Related
    ENSMUSP00000083547.7, ENSMUST00000086361.13
    Conserved Domains (1) summary
    pfam17737
    Location:22 → 116
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)

  2. NM_206536.3 → NP_996259.3  protein HIDE1 isoform 2 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an in-frame exon in the 5' coding region, compared to variant 1, and encodes a shorter protein (isoform 2) compared to isoform 1.
    Source sequence(s)
    AC163748
    Consensus CDS
    CCDS22905.2
    UniProtKB/TrEMBL
    Z4YNA9
    Related
    ENSMUSP00000134056.4, ENSMUST00000173769.4
    Conserved Domains (1) summary
    pfam17737
    Location:22 → 116
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    21437410..21456629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011242566.3 → XP_011240868.1  protein HIDE1 isoform X5

    UniProtKB/TrEMBL
    A0A0B4J1G2
    Conserved Domains (1) summary
    pfam17737
    Location:26 → 120
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)

  2. XM_036155092.1 → XP_036010985.1  protein HIDE1 isoform X1

    Conserved Domains (1) summary
    pfam17737
    Location:26 → 120
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)

  3. XM_036155093.1 → XP_036010986.1  protein HIDE1 isoform X3

    Conserved Domains (1) summary
    pfam17737
    Location:26 → 120
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)

  4. XM_011242567.4 → XP_011240869.1  protein HIDE1 isoform X2

    Conserved Domains (1) summary
    pfam17737
    Location:26 → 120
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)

  5. XM_030244431.2 → XP_030100291.1  protein HIDE1 isoform X4

    Conserved Domains (1) summary
    pfam17737
    Location:26 → 120
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q75VT8.1 GenPept UniProtKB/Swiss-Prot:Q75VT8

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