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CG12104 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 38187, updated on 2-Nov-2024

Summary

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Official Symbol
CG12104provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0035238
Locus tag
Dmel_CG12104
See related
AllianceGenome:FB:FBgn0035238
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG12104
Summary
Is expressed in several structures, including embryonic proventriculus inner layer; gut section; male germline cell; posterior midgut primordium; and proventriculus anlage. Orthologous to several human genes including TOX (thymocyte selection associated high mobility group box). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

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See CG12104 in Genome Data Viewer
Location:
62A7-62A7; 3-0.5 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (1600726..1602674, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (1600726..1602674, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Transmembrane endosomal protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR45814 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The HMG-box-containing proteins tHMG-1 and tHMG-2 interact during the histone-to-protamine transition in Drosophila spermatogenesis. Gärtner SM, et al. Eur J Cell Biol, 2015 Jan. PMID 25464903
  2. Identification of germ plasm-enriched mRNAs in Drosophila melanogaster by the cDNA microarray technique. Szuperák M, et al. Gene Expr Patterns, 2005 Jun. PMID 15939385
  3. A Testis-Specific Chaperone and the Chromatin Remodeler ISWI Mediate Repackaging of the Paternal Genome. Doyen CM, et al. Cell Rep, 2015 Nov 17. PMID 26549447
  4. Comparison of independent screens on differentially vulnerable motor neurons reveals alpha-synuclein as a common modifier in motor neuron diseases. Kline RA, et al. PLoS Genet, 2017 Mar. PMID 28362802, Free PMC Article
  5. The Genetic Basis for Variation in Sensitivity to Lead Toxicity in Drosophila melanogaster. Zhou S, et al. Environ Health Perspect, 2016 Jul. PMID 26859824, Free PMC Article

See all (31) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG12104-PA
CG12104-PB
CG12104-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    1600726..1602674 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001274338.1 → NP_001261267.1  uncharacterized protein Dmel_CG12104, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001261267.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W0D2
    Conserved Domains (1) summary
    cd00084
    Location:76 → 140
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

  2. NM_139372.3 → NP_647629.1  uncharacterized protein Dmel_CG12104, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_647629.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W0D2
    Related
    FBpp0072705
    Conserved Domains (1) summary
    cd00084
    Location:76 → 140
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

  3. NM_001299971.1 → NP_001286900.1  uncharacterized protein Dmel_CG12104, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001286900.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    X2JG46
    Conserved Domains (1) summary
    cd00084
    Location:52 → 116
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9W0D2 Q9W0D2
X2JG46 X2JG46

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