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4930590J08Rik RIKEN cDNA 4930590J08 gene [ Mus musculus (house mouse) ]

Gene ID: 381798, updated on 18-Sep-2024

Summary

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Official Symbol
4930590J08Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930590J08 geneprovided by MGI
Primary source
MGI:MGI:2685917
See related
Ensembl:ENSMUSG00000034063 AllianceGenome:MGI:2685917
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1071
Summary
Predicted to be located in cytoplasm. Orthologous to human C3orf20 (chromosome 3 open reading frame 20). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 24.6) See more
Orthologs
human all
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Genomic context

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See 4930590J08Rik in Genome Data Viewer
Location:
6 D1; 6 40.94 cM
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (91877732..91928717)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (91900751..91951736)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_16652 Neighboring gene STARR-seq mESC enhancer starr_16656 Neighboring gene solute carrier family 6 (neurotransmitter transporter, taurine), member 6 Neighboring gene STARR-seq mESC enhancer starr_16660 Neighboring gene glutamate receptor interacting protein 2 Neighboring gene coiled-coil domain containing 174 Neighboring gene STARR-positive B cell enhancer ABC_E6456 Neighboring gene predicted gene, 53299 Neighboring gene FYVE, RhoGEF and PH domain containing 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Impaired fertility in 4930590J08Rik mutant male mice is associated with defective sperm energy metabolism. Chen R, et al. FASEB J, 2022 Dec. PMID 36331537
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Impaired fertility in 4930590J08Rik mutant male mice is associated with defective sperm energy metabolism.
    Title: Impaired fertility in 4930590J08Rik mutant male mice is associated with defective sperm energy metabolism.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1)  1 citation
  • Targeted (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein C3orf20 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198668.2 → NP_941070.1  uncharacterized protein C3orf20 homolog

    See identical proteins and their annotated locations for NP_941070.1

    Status: VALIDATED

    Source sequence(s)
    AC168852, AK029822
    Consensus CDS
    CCDS51853.1
    UniProtKB/Swiss-Prot
    Q8CDN1
    Related
    ENSMUSP00000146101.2, ENSMUST00000205686.2
    Conserved Domains (1) summary
    pfam14977
    Location:357 → 559
    FAM194; FAM194 protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    91877732..91928717
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006506332.4 → XP_006506395.1  uncharacterized protein C3orf20 homolog isoform X1

    See identical proteins and their annotated locations for XP_006506395.1

    UniProtKB/Swiss-Prot
    Q8CDN1
    Conserved Domains (1) summary
    pfam14977
    Location:357 → 559
    FAM194; FAM194 protein

  2. XM_017321667.2 → XP_017177156.1  uncharacterized protein C3orf20 homolog isoform X4

    Conserved Domains (1) summary
    pfam14977
    Location:357 → 559
    FAM194; FAM194 protein

  3. XM_017321666.2 → XP_017177155.1  uncharacterized protein C3orf20 homolog isoform X3

    Conserved Domains (1) summary
    pfam14977
    Location:335 → 537
    FAM194; FAM194 protein

  4. XM_017321665.2 → XP_017177154.1  uncharacterized protein C3orf20 homolog isoform X2

    Conserved Domains (1) summary
    pfam14977
    Location:356 → 558
    FAM194; FAM194 protein
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8CDN1.1 GenPept UniProtKB/Swiss-Prot:Q8CDN1

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