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atp6ap2.S ATPase, H+ transporting, lysosomal accessory protein 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380574, updated on 18-Sep-2024

Summary

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Official Symbol
atp6ap2.S
Official Full Name
ATPase, H+ transporting, lysosomal accessory protein 2 S homeolog
Primary source
Xenbase:XB-GENE-6078197
Locus tag
XELAEV_18014748mg
See related
EnsemblRapid:ENSXLAG00005026546
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
atp6ap2
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Genomic context

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See atp6ap2.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (49308469..49328084, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (46482366..46501836, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 9 X-linked S homeolog Neighboring gene mediator complex subunit 14 S homeolog Neighboring gene uncharacterized LOC108709420 Neighboring gene uncharacterized LOC121400522

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Drosophila ATP6AP2/VhaPRR functions both as a novel planar cell polarity core protein and a regulator of endosomal trafficking. Hermle T, et al. EMBO J, 2013 Jan 23. PMID 23292348, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC69030

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
  
located_in bounding membrane of organelle IEA
Inferred from Electronic Annotation
more info
  
located_in clathrin-coated vesicle membrane IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in dendritic spine membrane IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
  
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ATPase, H+ transporting, lysosomal accessory protein 2 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087411.1 → NP_001080880.1  ATPase, H+ transporting, lysosomal accessory protein 2 S homeolog precursor

    See identical proteins and their annotated locations for NP_001080880.1

    Status: PROVISIONAL

    Source sequence(s)
    BC056060
    UniProtKB/TrEMBL
    A0A974DHC1, Q7T0S3
    Related
    ENSXLAP00005078852.1, ENSXLAT00005080443.1
    Conserved Domains (2) summary
    pfam07850
    Location:252 → 348
    Renin_r; Renin receptor-like protein
    cl01681
    Location:143 → 242
    DUF2115; Uncharacterized protein conserved in archaea (DUF2115)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    49308469..49328084 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041583004.1 → XP_041438938.1  ATPase, H+ transporting, lysosomal accessory protein 2 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MBG6
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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