arl5c.L ARF like GTPase 5C L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: arl5c.L
Official Full Name: ARF like GTPase 5C L homeolog
Primary source: Xenbase:XB-GENE-6253416
Locus tag: XELAEV_18043184mg
See related: EnsemblRapid:ENSXLAG00005026661 AllianceGenome:Xenbase:XB-GENE-6253416
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: arl12; arl5c; cg7197; arl5b-b; arl5c-a; arl5c-b; arl5c.S
Summary: Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within intracellular protein transport; protein localization to Golgi membrane; and vesicle-mediated transport. Predicted to be located in trans-Golgi network. Is expressed in ectoderm; musculoskeletal system; and pharyngeal arch. Orthologous to human ARL5C (ADP ribosylation factor like GTPase 5C). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 9_10L

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10L	NC_054387.1 (2535826..2541899)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10L	NC_030740.1 (2500522..2506653)

Chromosome 9_10L - NC_054387.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables GTP binding	IEA Inferred from Electronic Annotation more info
enables GTPase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within intracellular protein transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within protein localization to Golgi membrane	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within vesicle-mediated transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in trans-Golgi network	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ADP ribosylation factor like GTPase 5C L homeolog; ARF like GTPase 5C L homeolog

Names: ADP ribosylation factor like GTPase 5C S homeolog; ADP-ribosylation factor-like 5B; ADP-ribosylation factor-like 5C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001087409.1 → NP_001080878.1 ARF like GTPase 5C L homeolog

See identical proteins and their annotated locations for NP_001080878.1

Status: PROVISIONAL

Source sequence(s)

BC045059

UniProtKB/TrEMBL

A0A974BX35, Q4QR18, Q7ZXC2

Related

ENSXLAP00005079273.1, ENSXLAT00005080864.1

Conserved Domains (2) summary

cd04153
Location:3 → 175

Arl5_Arl8; Arf-like 5 (Arl5) and 8 (Arl8) GTPases

smart00178
Location:14 → 176

SAR; Sar1p-like members of the Ras-family of small GTPases