U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ldhb.S lactate dehydrogenase B S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380546, updated on 4-Nov-2024

Summary

Official Symbol
ldhb.S
Official Full Name
lactate dehydrogenase B S homeolog
Primary source
Xenbase:XB-GENE-5908692
Locus tag
XELAEV_18019895mg
See related
EnsemblRapid:ENSXLAG00005000919 AllianceGenome:Xenbase:XB-GENE-5908692
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ldh2; ldhb; ldhc; LDH-B; ldh-h; ldhba; trg-5; ldhb-a; ldhb-b; ldhb.L
Summary
Predicted to enable L-lactate dehydrogenase activity. Predicted to act upstream of or within lactate metabolic process and pyruvate metabolic process. Predicted to be located in cytoplasm. Orthologous to human LDHB (lactate dehydrogenase B). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See ldhb.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (6880742..6893430, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (6906421..6919130, complement)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene tetraspanin 9 S homeolog Neighboring gene PWP1 homolog, endonuclein S homeolog Neighboring gene ankyrin repeat and BTB domain containing 3 S homeolog Neighboring gene cryptochrome circadian regulator 1 S homeolog

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Clone Names

  • MGC64471

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables L-lactate dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within lactate metabolic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within pyruvate metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
L-lactate dehydrogenase B chain
Names
L-lactate dehydrogenase C chain
LDH-C
lactate dehydrogenase 2, B chain
lactate dehydrogenase B L homeolog
lactate dehydrogenase-B
lactate dehydrogenase-C
XP_018109579.1
XP_018109580.1
XP_018109581.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087383.3NP_001080852.2  L-lactate dehydrogenase B chain

    Status: VALIDATED

    Source sequence(s)
    JAGEVR010000040
    UniProtKB/TrEMBL
    A0A1L8GQX2, A0A974D8E2

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    6880742..6893430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018254091.2XP_018109580.1  L-lactate dehydrogenase B chain isoform X1

    UniProtKB/Swiss-Prot
    P42119
    UniProtKB/TrEMBL
    A0A1L8GQX2, A0A974D8E2
    Related
    ENSXLAP00005002765.1, ENSXLAT00005002817.1
  2. XM_018254092.2XP_018109581.1  L-lactate dehydrogenase B chain isoform X1

    UniProtKB/Swiss-Prot
    P42119
    UniProtKB/TrEMBL
    A0A1L8GQX2, A0A974D8E2
    Related
    ENSXLAP00005002760.1, ENSXLAT00005002812.1
  3. XM_018254090.2XP_018109579.1  L-lactate dehydrogenase B chain isoform X1

    UniProtKB/Swiss-Prot
    P42119
    UniProtKB/TrEMBL
    A0A1L8GQX2, A0A974D8E2
    Related
    ENSXLAP00005002759.1, ENSXLAT00005002811.1