U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

cfap36.L cilia and flagella associated protein 36 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380533, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
cfap36.L
Official Full Name
cilia and flagella associated protein 36 L homeolog
Primary source
Xenbase:XB-GENE-988927
Locus tag
XELAEV_18026541mg
See related
EnsemblRapid:ENSXLAG00005012497 AllianceGenome:Xenbase:XB-GENE-988927
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
cfap36; ccdc104
Summary
Predicted to be located in several cellular components, including axoneme; ciliary base; and motile cilium. Is expressed in dermal system. Orthologous to human CFAP36 (cilia and flagella associated protein 36). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See cfap36.L in Genome Data Viewer
Location:
chromosome: 5L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (34703254..34725200, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (33950974..33972974, complement)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108716599 Neighboring gene protein phosphatase 4 regulatory subunit 3B L homeolog Neighboring gene uncharacterized LOC108716600 Neighboring gene forkhead box A2 L homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC15407, MGC69019

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in axoneme IEA
Inferred from Electronic Annotation
more info
  
located_in ciliary base IEA
Inferred from Electronic Annotation
more info
  
located_in cilium IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in motile cilium IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in organelle IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
cilia- and flagella-associated protein 36
Names
coiled-coil domain containing 104
coiled-coil domain-containing protein 104

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087370.1 → NP_001080839.1  cilia- and flagella-associated protein 36

    See identical proteins and their annotated locations for NP_001080839.1

    Status: PROVISIONAL

    Source sequence(s)
    BC056056
    UniProtKB/Swiss-Prot
    Q7T0S7
    UniProtKB/TrEMBL
    A0A974CUK7, A0A974CVS9
    Related
    ENSXLAP00005036653.1, ENSXLAT00005037563.1
    Conserved Domains (1) summary
    pfam11527
    Location:9 → 116
    ARL2_Bind_BART; The ARF-like 2 binding protein BART

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    34703254..34725200 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7T0S7.1 GenPept UniProtKB/Swiss-Prot:Q7T0S7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.