rbm22.S RNA binding motif protein 22 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: rbm22.S
Official Full Name: RNA binding motif protein 22 S homeolog
Primary source: Xenbase:XB-GENE-971204
Locus tag: XELAEV_18033404mg
See related: EnsemblRapid:ENSXLAG00005004850 AllianceGenome:Xenbase:XB-GENE-971204
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: rbm22; cg14641
Summary: Predicted to enable U6 snRNA binding activity and pre-mRNA binding activity. Predicted to act upstream of or within mRNA cis splicing, via spliceosome and positive regulation of RNA splicing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of Prp19 complex; U2-type catalytic step 1 spliceosome; and U2-type catalytic step 2 spliceosome. Orthologous to human RBM22 (RNA binding motif protein 22). [provided by Alliance of Genome Resources, Nov 2024]
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 6S

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	6S	NC_054382.1 (75175115..75188573, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	6S	NC_030735.1 (63813589..63826924)

Chromosome 6S - NC_054382.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help

Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables U6 snRNA binding	IEA Inferred from Electronic Annotation more info
enables U6 snRNA binding	ISS Inferred from Sequence or Structural Similarity more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables pre-mRNA binding	IEA Inferred from Electronic Annotation more info
enables pre-mRNA binding	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within RNA splicing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within mRNA cis splicing, via spliceosome	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within mRNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within positive regulation of RNA splicing	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
part_of Prp19 complex	IEA Inferred from Electronic Annotation more info
part_of U2-type catalytic step 1 spliceosome	IEA Inferred from Electronic Annotation more info
part_of U2-type catalytic step 2 spliceosome	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	ISS Inferred from Sequence or Structural Similarity more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
located_in nucleus	ISS Inferred from Sequence or Structural Similarity more info
part_of spliceosomal complex	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: pre-mRNA-splicing factor RBM22

Names: RNA-binding motif protein 22

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001087307.1 → NP_001080776.1 pre-mRNA-splicing factor RBM22

See identical proteins and their annotated locations for NP_001080776.1

Status: PROVISIONAL

Source sequence(s)

BC045067

UniProtKB/Swiss-Prot

Q7ZXB5

UniProtKB/TrEMBL

A0A974CKB3

Related

ENSXLAP00005014474.1, ENSXLAT00005014670.1

Conserved Domains (3) summary

smart00356
Location:159 → 185

ZnF_C3H1; zinc finger

COG0724
Location:214 → 327

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

cd12224
Location:231 → 304

RRM_RBM22; RNA recognition motif (RRM) found in Pre-mRNA-splicing factor RBM22 and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

75175115..75188573 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041567082.1 → XP_041423016.1 pre-mRNA-splicing factor RBM22 isoform X1

UniProtKB/TrEMBL

A0A8J1L0D7

Related

ENSXLAP00005014471.1, ENSXLAT00005014667.1

Conserved Domains (3) summary

TIGR01628
Location:234 → 377

PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

smart00356
Location:159 → 185

ZnF_C3H1; zinc finger

smart00360
Location:233 → 300

RRM; RNA recognition motif