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calr.L calreticulin homeolog L [ Xenopus laevis (African clawed frog) ]

Gene ID: 380458, updated on 17-Aug-2024

Summary

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Official Symbol
calr.L
Official Full Name
calreticulin homeolog L
Primary source
Xenbase:XB-GENE-17330280
Locus tag
XELAEV_18019056mg
See related
EnsemblRapid:ENSXLAG00005002583
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
crc; crt; calr
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Genomic context

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Location:
chromosome: 3L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (149316167..149328011, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (132395548..132407496, complement)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene growth arrest and DNA damage-inducible proteins-interacting protein 1-like Neighboring gene tetratricopeptide repeat domain 39A like L homeolog Neighboring gene phenylalanyl-tRNA synthetase subunit alpha L homeolog Neighboring gene synaptonemal complex central element protein 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53169

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein folding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum lumen IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
calreticulin
Names
calreticulin L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087296.1 → NP_001080765.1  calreticulin precursor

    See identical proteins and their annotated locations for NP_001080765.1

    Status: PROVISIONAL

    Source sequence(s)
    BC046699
    UniProtKB/TrEMBL
    A0A974DER1, Q7ZWU8
    Related
    ENSXLAP00005007700.1, ENSXLAT00005007823.1
    Conserved Domains (1) summary
    pfam00262
    Location:26 → 332
    Calreticulin; Calreticulin family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    149316167..149328011 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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