hmgn1.S high mobility group nucleosome binding domain 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: hmgn1.S
Official Full Name: high mobility group nucleosome binding domain 1 S homeolog
Primary source: Xenbase:XB-GENE-6253615
Locus tag: XELAEV_18014343mg
See related: EnsemblRapid:ENSXLAG00005027017 AllianceGenome:Xenbase:XB-GENE-6253615
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: hmg14; hmgn1; hmgn1b; hmgn1-a; hmgn1-b
Summary: Predicted to enable nucleosomal DNA binding activity. Predicted to act upstream of or within chromatin organization. Predicted to be located in chromatin and nucleus. Is expressed in liver and biliary system and respiratory system. Orthologous to human HMGN1 (high mobility group nucleosome binding domain 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 2S

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2S	NC_054374.1 (22262938..22268332, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	2S	NC_030727.1 (22220818..22226214, complement)

Chromosome 2S - NC_054374.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Function of chromatin modifier Hmgn1 during neural crest and craniofacial development.
Title: Function of chromatin modifier Hmgn1 during neural crest and craniofacial development.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables chromatin binding	IEA Inferred from Electronic Annotation more info
enables nucleosomal DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within chromatin organization	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in chromatin	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: high mobility group nucleosome binding domain 1 S homeolog

Names: high-mobility group nucleosome binding domain 1 b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001087294.2 → NP_001080763.2 high mobility group nucleosome binding domain 1 S homeolog

Status: PROVISIONAL

Source sequence(s)

DQ096848

UniProtKB/TrEMBL

A0A1L8H5C0, A0A974HUX1

Conserved Domains (1) summary

smart00527
Location:2 → 98

HMG17; domain in high mobilty group proteins HMG14 and HMG 17

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

22262938..22268332 complement

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GenBank, FASTA, Sequence Viewer (Graphics)