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snu13.L small nuclear ribonucleoprotein 13 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380416, updated on 4-Nov-2024

Summary

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Official Symbol
snu13.L
Official Full Name
small nuclear ribonucleoprotein 13 L homeolog
Primary source
Xenbase:XB-GENE-6253626
Locus tag
XELAEV_18023497mg
See related
AllianceGenome:Xenbase:XB-GENE-6253626
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
fa1; fa-1; hoip; nhpx; otk27; snu13; ssfa1; spag12; nhp2l1-b; snrnp15-5
Summary
Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA splicing, via spliceosome; maturation of LSU-rRNA; and maturation of SSU-rRNA. Predicted to be located in nucleolus. Predicted to be part of several cellular components, including box C/D methylation guide snoRNP complex; cytosolic large ribosomal subunit; and nucleus. Orthologous to human SNU13 (small nuclear ribonucleoprotein 13). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See snu13.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (110888432..110890908)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (105636649..105639125)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene meiosis inhibitor protein 1-like Neighboring gene meiosis inhibitor protein 1-like Neighboring gene X-ray repair complementing defective repair in Chinese hamster cells 6 L homeolog Neighboring gene desumoylating isopeptidase 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53430

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within maturation of LSU-rRNA IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
  
part_of box C/D methylation guide snoRNP complex IEA
Inferred from Electronic Annotation
more info
  
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
  
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small nuclear ribonucleoprotein 13 L homeolog
Names
NHP2 non-histone chromosome protein 2-like 1
SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) L homeolog
hoi polloi

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087255.1 → NP_001080724.1  small nuclear ribonucleoprotein 13 L homeolog

    See identical proteins and their annotated locations for NP_001080724.1

    Status: PROVISIONAL

    Source sequence(s)
    BC046579
    UniProtKB/TrEMBL
    A0A974D6V0, Q7ZWY8
    Conserved Domains (1) summary
    cl00600
    Location:16 → 126
    Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    110888432..110890908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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