snrnp40.S small nuclear ribonucleoprotein, U5 40kDa subunit S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: snrnp40.S
Official Full Name: small nuclear ribonucleoprotein, U5 40kDa subunit S homeolog
Primary source: Xenbase:XB-GENE-6253627
Locus tag: XELAEV_18015116mg
See related: EnsemblRapid:ENSXLAG00005009522 AllianceGenome:Xenbase:XB-GENE-6253627
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: spf38; wdr57; prp8bp; snrnp40; snrnp40-a; snrnp40-b
Summary: Predicted to enable RNA binding activity. Predicted to be located in nucleus. Predicted to be part of catalytic step 2 spliceosome. Orthologous to human SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 2S

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2S	NC_054374.1 (69321928..69330403)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	2S	NC_030727.1 (64899264..64907837)

Chromosome 2S - NC_054374.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of catalytic step 2 spliceosome	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: small nuclear ribonucleoprotein, U5 40kDa subunit S homeolog

Names: U5 snRNP-specific 40 kDa protein (hPrp8-binding); small nuclear ribonucleoprotein 40kDa (U5)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001087243.1 → NP_001080712.1 small nuclear ribonucleoprotein, U5 40kDa subunit S homeolog

See identical proteins and their annotated locations for NP_001080712.1

Status: PROVISIONAL

Source sequence(s)

BC106625

UniProtKB/TrEMBL

A0A974DLW7, A0A974HVN0, Q7ZXE3

Related

ENSXLAP00005027870.1, ENSXLAT00005028603.1

Conserved Domains (3) summary

COG2319
Location:40 → 333

WD40; WD40 repeat [General function prediction only]

cd00200
Location:42 → 331

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:50 → 87

7WD40; WD40 repeat [structural motif]