celf3.S CUGBP, Elav-like family member 3 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: celf3.S
Official Full Name: CUGBP, Elav-like family member 3 S homeolog
Primary source: Xenbase:XB-GENE-5796640
Locus tag: XELAEV_18042973mg
See related: EnsemblRapid:ENSXLAG00005008656 AllianceGenome:Xenbase:XB-GENE-5796640
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: etr1; cagh4; celf3; erda4; etr-1; tnrc4; brunol1; celf3-a; celf3-b; tnrc4-b
Summary: Predicted to enable mRNA binding activity. Predicted to act upstream of or within positive regulation of mRNA splicing, via spliceosome. Predicted to be located in cytoplasm and nucleus. Predicted to be part of ribonucleoprotein complex. Orthologous to human CELF3 (CUGBP Elav-like family member 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 8S

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	8S	NC_054386.1 (102773518..102800730)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	8S	NC_030739.1 (97788543..97815848)

Chromosome 8S - NC_054386.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables mRNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within mRNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within mRNA splice site recognition	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within positive regulation of mRNA splicing, via spliceosome	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within regulation of alternative mRNA splicing, via spliceosome	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: CUGBP Elav-like family member 3-B

Names: CUG-BP- and ETR-3-like factor 3-B; ELAV-type RNA-binding protein 1-B; ETR-1-B; RNA-binding protein BRUNOL-1-B; bruno-like protein 1-B; trinucleotide repeat containing 4; trinucleotide repeat-containing gene 4 protein B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001087226.1 → NP_001080695.1 CUGBP Elav-like family member 3-B

See identical proteins and their annotated locations for NP_001080695.1

Status: PROVISIONAL

Source sequence(s)

BC046942

UniProtKB/Swiss-Prot

Q7ZWM3

UniProtKB/TrEMBL

A0A974H722

Related

ENSXLAP00005025143.1, ENSXLAT00005025852.1

Conserved Domains (4) summary

cd12632
Location:2 → 88

RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

cd12635
Location:94 → 174

RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

cd12639
Location:373 → 451

RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

TIGR01661
Location:9 → 458

ELAV_HUD_SF; ELAV/HuD family splicing factor