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arcn1.L archain 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380375, updated on 4-Nov-2024

Summary

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Official Symbol
arcn1.L
Official Full Name
archain 1 L homeolog
Primary source
Xenbase:XB-GENE-986169
See related
EnsemblRapid:ENSXLAG00005023081 AllianceGenome:Xenbase:XB-GENE-986169
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
arcn1
Summary
Orthologous to human ARCN1 (archain 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See arcn1.L in Genome Data Viewer
Location:
chromosome: 7S
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (69995672..70009901, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016695133.1 (11948..19920, complement)

Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121396447 Neighboring gene cilia- and flagella-associated protein 251-like Neighboring gene intraflagellar transport 46 S homeolog Neighboring gene tetratricopeptide repeat protein 36-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC68969

General protein information

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Preferred Names
archain 1 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087214.1 → NP_001080683.1  archain 1 L homeolog

    See identical proteins and their annotated locations for NP_001080683.1

    Status: PROVISIONAL

    Source sequence(s)
    BC056030
    UniProtKB/TrEMBL
    A0A974HCE7, Q7T0U9
    Related
    ENSXLAP00005068076.1, ENSXLAT00005069610.1
    Conserved Domains (1) summary
    cd09254
    Location:274 → 510
    AP_delta-COPI_MHD; Mu homology domain (MHD) of adaptor protein (AP) coat protein I (COPI) delta subunit

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    69995672..70009901 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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