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elf1.S E74 like ETS transcription factor 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380374, updated on 17-Aug-2024

Summary

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Official Symbol
elf1.S
Official Full Name
E74 like ETS transcription factor 1 S homeolog
Primary source
Xenbase:XB-GENE-17339211
Locus tag
XELAEV_18015751mg
See related
EnsemblRapid:ENSXLAG00005025877
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
elf-1; xelf1
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Genomic context

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Location:
chromosome: 2S
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (123779646..123855938, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (114728444..114805055, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121400670 Neighboring gene chondromodulin S homeolog Neighboring gene SGT1 homolog, MIS12 kinetochore complex assembly cochaperone S homeolog Neighboring gene zinc finger BED domain-containing protein 5-like Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene WW domain binding protein 4 S homeolog Neighboring gene kelch repeat and BTB (POZ) domain containing 7 S homeolog Neighboring gene mitochondrial translational release factor 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC52937

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
E74 like ETS transcription factor 1 S homeolog
Names
E74-like factor 1 (ets domain transcription factor) S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087213.1 → NP_001080682.1  E74 like ETS transcription factor 1 S homeolog

    See identical proteins and their annotated locations for NP_001080682.1

    Status: PROVISIONAL

    Source sequence(s)
    BC044973
    UniProtKB/TrEMBL
    Q7ZXI9
    Related
    ENSXLAP00005076911.1, ENSXLAT00005078502.1
    Conserved Domains (2) summary
    pfam00178
    Location:212 → 291
    Ets; Ets-domain
    pfam12310
    Location:2 → 116
    Elf-1_N; Transcription factor protein N terminal

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    123779646..123855938 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018248075.2 → XP_018103564.1  E74 like ETS transcription factor 1 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0UI16

  2. XM_018248072.2 → XP_018103561.1  E74 like ETS transcription factor 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8H9C2, A0A974HWG5

  3. XM_018248073.2 → XP_018103562.1  E74 like ETS transcription factor 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8H9C2, A0A974HWG5

  4. XM_018248076.2 → XP_018103565.1  E74 like ETS transcription factor 1 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0UI16

  5. XM_018248074.2 → XP_018103563.1  E74 like ETS transcription factor 1 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0UI16

  6. XM_018248071.2 → XP_018103560.1  E74 like ETS transcription factor 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8H9C2, A0A974HWG5
Nucleotide Protein Strain
Heading Accession and Version

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