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rfc5.L replication factor C subunit 5 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380369, updated on 18-Sep-2024

Summary

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Official Symbol
rfc5.L
Official Full Name
replication factor C subunit 5 L homeolog
Primary source
Xenbase:XB-GENE-1016206
Locus tag
XELAEV_18007893mg
See related
EnsemblRapid:ENSXLAG00005030139
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rfc5
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Genomic context

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See rfc5.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (179248338..179284382)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (166095936..166135765)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene nitric oxide synthase 1 L homeolog Neighboring gene kinase suppressor of ras 2 L homeolog Neighboring gene WD repeat and SOCS box containing 2 L homeolog Neighboring gene V-set and immunoglobulin domain containing 10 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53482

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA clamp loader activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA repair IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within DNA replication IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within DNA-templated DNA replication IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of DNA replication factor C complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
replication factor C subunit 5 L homeolog
Names
replication factor C (activator 1) 5, 36.5kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087208.1 → NP_001080677.1  replication factor C subunit 5 L homeolog

    See identical proteins and their annotated locations for NP_001080677.1

    Status: PROVISIONAL

    Source sequence(s)
    BC044712
    UniProtKB/TrEMBL
    A0A974E3A3, A0A974I267, Q7ZTM5
    Related
    ENSXLAP00005090650.1, ENSXLAT00005092328.1
    Conserved Domains (4) summary
    cd00009
    Location:30 → 171
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    PRK00440
    Location:13 → 324
    rfc; replication factor C small subunit; Reviewed
    pfam08542
    Location:253 → 322
    Rep_fac_C; Replication factor C C-terminal domain
    pfam16193
    Location:187 → 215
    AAA_assoc_2; AAA C-terminal domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    179248338..179284382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041564251.1 → XP_041420185.1  replication factor C subunit 5 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1KSA8
    Conserved Domains (1) summary
    PRK00440
    Location:3 → 244
    rfc; replication factor C small subunit; Reviewed
Nucleotide Protein Strain
Heading Accession and Version

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