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thoc5.S THO complex 5 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380360, updated on 3-Jul-2024

Summary

Official Symbol
thoc5.S
Official Full Name
THO complex 5 S homeolog
Primary source
Xenbase:XB-GENE-1015173
Locus tag
XELAEV_18010363mg
See related
EnsemblRapid:ENSXLAG00005014392
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
fmip; thoc5; thoc5-a; thoc5-b
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Genomic context

See thoc5.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
21
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (133974398..133997453)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (118338785..118361887)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121399473 Neighboring gene serine/threonine-protein kinase N2-like Neighboring gene phosphatidylinositol glycan anchor biosynthesis class U protein-like Neighboring gene neurofilament heavy chain S homeolog Neighboring gene adaptor related protein complex 1 subunit beta 1 S homeolog

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC53814

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within mRNA transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
THO complex subunit 5 homolog B
Names
Fms interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087199.1NP_001080668.1  THO complex subunit 5 homolog B

    See identical proteins and their annotated locations for NP_001080668.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045075
    UniProtKB/Swiss-Prot
    Q7ZXA8
    UniProtKB/TrEMBL
    A0A974I1G4
    Related
    ENSXLAP00005042126.1, ENSXLAT00005043192.1
    Conserved Domains (1) summary
    pfam09766
    Location:92447
    FimP; Fms-interacting protein

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    133974398..133997453
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018233865.2XP_018089354.1  THO complex subunit 5 homolog B isoform X1

    UniProtKB/TrEMBL
    A0A8J0TT92
    Related
    ENSXLAP00005042123.1, ENSXLAT00005043189.1