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kdelr2.L KDEL endoplasmic reticulum protein retention receptor 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380330, updated on 17-Aug-2024

Summary

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Official Symbol
kdelr2.L
Official Full Name
KDEL endoplasmic reticulum protein retention receptor 2 L homeolog
Primary source
Xenbase:XB-GENE-941349
Locus tag
XELAEV_18045328mg
See related
EnsemblRapid:ENSXLAG00005013551
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ergr15; kdelr1; kdelr2
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Genomic context

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Location:
chromosome: 9_10L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (111233014..111244960, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (100631739..100643686, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 42 L homeolog Neighboring gene PMS1 homolog 2, mismatch repair system component L homeolog Neighboring gene otoancorin L homeolog Neighboring gene uncharacterized LOC121397972

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An atlas of differential gene expression during early Xenopus embryogenesis. Pollet N, et al. Mech Dev, 2005 Mar. PMID 15763213
  2. Axeldb: a Xenopus laevis database focusing on gene expression. Pollet N, et al. Nucleic Acids Res, 2000 Jan 1. PMID 10592204, Free PMC Article
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53148

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ER retention sequence binding IEA
Inferred from Electronic Annotation
more info
  
enables KDEL sequence binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein retention in ER lumen IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in COPI-coated vesicle membrane IEA
Inferred from Electronic Annotation
more info
  
colocalizes_with COPI-coated vesicle membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
ER lumen protein-retaining receptor 2
Names
KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2
KDEL receptor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087169.1 → NP_001080638.1  ER lumen protein-retaining receptor 2

    See identical proteins and their annotated locations for NP_001080638.1

    Status: PROVISIONAL

    Source sequence(s)
    BC044272
    UniProtKB/Swiss-Prot
    Q7ZXS5
    UniProtKB/TrEMBL
    A0A974C0K8
    Related
    ENSXLAP00005039957.1, ENSXLAT00005040880.1
    Conserved Domains (1) summary
    pfam00810
    Location:28 → 169
    ER_lumen_recept; ER lumen protein retaining receptor

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    111233014..111244960 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7ZXS5.1 GenPept UniProtKB/Swiss-Prot:Q7ZXS5

Gene LinkOut

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