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peli1.S pellino E3 ubiquitin protein ligase 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380318, updated on 4-Nov-2024

Summary

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Official Symbol
peli1.S
Official Full Name
pellino E3 ubiquitin protein ligase 1 S homeolog
Primary source
Xenbase:XB-GENE-992983
Locus tag
XELAEV_18028489mg
See related
EnsemblRapid:ENSXLAG00005016617 AllianceGenome:Xenbase:XB-GENE-992983
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
peli1; peli2; peli2.S; pellino1; pellino2; xpellino1; xpellino2
Summary
Human ortholog(s) of this gene implicated in colorectal cancer. Orthologous to human PELI1 (pellino E3 ubiquitin protein ligase 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See peli1.S in Genome Data Viewer
Location:
chromosome: 5S
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (1540731..1564834, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (1545015..1569181, complement)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene malate dehydrogenase 1 S homeolog Neighboring gene UDP-glucose pyrophosphorylase 2 S homeolog Neighboring gene uncharacterized LOC108717622 Neighboring gene lectin, galactoside-binding-like S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53565

General protein information

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Preferred Names
E3 ubiquitin-protein ligase pellino homolog 1; pellino E3 ubiquitin protein ligase 1 S homeolog
Names
pellino E3 ubiquitin protein ligase family member 2 S homeolog
pellino homolog 1
pellino homolog 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    1540731..1564834 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041564176.1 → XP_041420110.1  E3 ubiquitin-protein ligase pellino homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A8J1KS38, Q7ZXU3

  2. XM_041564175.1 → XP_041420109.1  E3 ubiquitin-protein ligase pellino homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A1L8G0M0, A0A974CPR6, Q7ZXU3
    Related
    ENSXLAP00005048898.1, ENSXLAT00005050035.1
    Conserved Domains (1) summary
    pfam04710
    Location:10 → 418
    Pellino

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001087157.1: Suppressed sequence

    Description
    NM_001087157.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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