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trnau1ap.S tRNA selenocysteine 1 associated protein 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380280, updated on 4-Nov-2024

Summary

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Official Symbol
trnau1ap.S
Official Full Name
tRNA selenocysteine 1 associated protein 1 S homeolog
Primary source
Xenbase:XB-GENE-6079018
See related
EnsemblRapid:ENSXLAG00005011162 AllianceGenome:Xenbase:XB-GENE-6079018
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
secp43; trnau1apl1; trnau1apl1.S
Summary
Predicted to enable tRNA binding activity. Predicted to act upstream of or within selenocysteine incorporation. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See trnau1ap.S in Genome Data Viewer
Location:
chromosome: 7S
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (107163904..107171944)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (88797263..88797729, complement)

Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene B-cell receptor CD22-like Neighboring gene 26S proteasome regulatory subunit 6B-like Neighboring gene uncharacterized LOC108705111 Neighboring gene myelin-associated glycoprotein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC69153

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within selenocysteine incorporation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tRNA selenocysteine 1 associated protein 1 S homeolog
Names
tRNA selenocysteine 1 associated protein 1 like 1 S homeolog
tRNA selenocysteine associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087119.1 → NP_001080588.1  tRNA selenocysteine 1 associated protein 1 S homeolog

    See identical proteins and their annotated locations for NP_001080588.1

    Status: PROVISIONAL

    Source sequence(s)
    BC056124
    UniProtKB/TrEMBL
    Q7T0M5
    Related
    ENSXLAP00005032789.1, ENSXLAT00005033581.1
    Conserved Domains (2) summary
    COG0724
    Location:2 → 132
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12610
    Location:3 → 86
    RRM1_SECp43; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    107163904..107171944
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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