pdcd6.L programmed cell death 6 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: pdcd6.L
Official Full Name: programmed cell death 6 L homeolog
Primary source: Xenbase:XB-GENE-960921
Locus tag: XELAEV_18031358mg
See related: EnsemblRapid:ENSXLAG00005006681 AllianceGenome:Xenbase:XB-GENE-960921
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: pdcd6
Summary: Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be located in cytoplasm. Orthologous to human PDCD6 (programmed cell death 6). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 6L

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	6L	NC_054381.1 (73510471..73532670, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	6L	NC_030734.1 (67696189..67718355, complement)

Chromosome 6L - NC_054381.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info
enables calcium-dependent protein binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: programmed cell death 6 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001087103.1 → NP_001080572.1 programmed cell death 6 L homeolog

See identical proteins and their annotated locations for NP_001080572.1

Status: PROVISIONAL

Source sequence(s)

BC044109

UniProtKB/TrEMBL

A0A974CPU4, Q2TAG5, Q7ZXU9

Related

ENSXLAP00005019772.1, ENSXLAT00005020143.1

Conserved Domains (2) summary

cd00051
Location:96 → 151

EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

pfam13499
Location:94 → 151

EF-hand_7; EF-hand domain pair

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

73510471..73532670 complement

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GenBank, FASTA, Sequence Viewer (Graphics)