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tubb4b.L tubulin beta 4B class IVb L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380258, updated on 17-Aug-2024

Summary

Official Symbol
tubb4b.L
Official Full Name
tubulin beta 4B class IVb L homeolog
Primary source
Xenbase:XB-GENE-969453
Locus tag
XELAEV_18038180mg
See related
EnsemblRapid:ENSXLAG00005018953
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
XLOT; tubb2; tubb4; tubb2c; tubb4b; betatub56d
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Genomic context

Location:
chromosome: 8L
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (1620133..1624100, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (1446676..1450645, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108698119 Neighboring gene solute carrier family 34 (type II sodium/phosphate cotransporter), member 3 L homeolog Neighboring gene uncharacterized LOC108698122 Neighboring gene uncharacterized LOC108698121 Neighboring gene protein FAM166A Neighboring gene uncharacterized LOC108698123 Neighboring gene polymerase (DNA directed), epsilon 3, accessory subunit L homeolog Neighboring gene aminolevulinate dehydratase L homeolog

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC64554

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within microtubule-based process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
tubulin beta-4 chain
Names
beta-Tubulin at 56D
oocyte tubulin
tubulin, beta 2C
tubulin, beta 4B class IVb

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087097.2NP_001080566.1  tubulin beta-4 chain

    See identical proteins and their annotated locations for NP_001080566.1

    Status: PROVISIONAL

    Source sequence(s)
    BC054297
    UniProtKB/Swiss-Prot
    P30883, Q5D080
    UniProtKB/TrEMBL
    A0A974C5M5, Q66KS4
    Related
    ENSXLAP00005055863.1, ENSXLAT00005057092.1
    Conserved Domains (2) summary
    PLN00220
    Location:1430
    PLN00220; tubulin beta chain; Provisional
    cd02187
    Location:2426
    beta_tubulin; The beta-tubulin family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    1620133..1624100 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)