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rpl4.L ribosomal protein L4 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380237, updated on 4-Nov-2024

Summary

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Official Symbol
rpl4.L
Official Full Name
ribosomal protein L4 L homeolog
Primary source
Xenbase:XB-GENE-968399
Locus tag
XELAEV_18018449mg
See related
EnsemblRapid:ENSXLAG00005023166 AllianceGenome:Xenbase:XB-GENE-968399
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rpl1; rpl4; rpl-4; rpl1a; rpl4-a; rpl4-b
Summary
Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in mesoderm; musculoskeletal system; nervous system; and visual system. Orthologous to human RPL4 (ribosomal protein L4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rpl4.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (123723733..123729807, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (108321366..108327440, complement)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase 1 L homeolog Neighboring gene small nuclear RNA activating complex polypeptide 5 L homeolog Neighboring gene small nucleolar RNA SNORD18 Neighboring gene small nucleolar RNA SNORD18 Neighboring gene small nucleolar RNA SNORD18 Neighboring gene small nucleolar RNA SNORD16 Neighboring gene small nucleolar RNA SNORD18 Neighboring gene small nucleolar RNA SNORD16 Neighboring gene uncharacterized LOC121401573 Neighboring gene lactase like L homeolog Neighboring gene SMAD family member 6 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nucleotide sequence of the L1 ribosomal protein gene of Xenopus laevis: remarkable sequence homology among introns. Loreni F, et al. EMBO J, 1985 Dec 16. PMID 3841512, Free PMC Article
  2. Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nishiyama A, et al. Nat Commun, 2020 Mar 6. PMID 32144273, Free PMC Article
  3. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  4. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC53834, MGC130828

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
large ribosomal subunit protein uL4A
Names
60S ribosomal protein L4-A
L1A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087076.1 → NP_001080545.1  large ribosomal subunit protein uL4A

    See identical proteins and their annotated locations for NP_001080545.1

    Status: PROVISIONAL

    Source sequence(s)
    BC106315
    UniProtKB/Swiss-Prot
    P08429, Q7ZY88, Q91843
    UniProtKB/TrEMBL
    A0A974HTZ7
    Related
    ENSXLAP00005068425.1, ENSXLAT00005069959.1
    Conserved Domains (3) summary
    PTZ00428
    Location:6 → 391
    PTZ00428; 60S ribosomal protein L4; Provisional
    pfam14374
    Location:280 → 352
    Ribos_L4_asso_C; 60S ribosomal protein L4 C-terminal domain
    cl00325
    Location:14 → 269
    Ribosomal_L4; Ribosomal protein L4/L1 family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    123723733..123729807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P08429.2 GenPept UniProtKB/Swiss-Prot:P08429

Gene LinkOut

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