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paip1.S poly(A) binding protein interacting protein 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380223, updated on 4-Nov-2024

Summary

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Official Symbol
paip1.S
Official Full Name
poly(A) binding protein interacting protein 1 S homeolog
Primary source
Xenbase:XB-GENE-866621
Locus tag
XELAEV_18010985mg
See related
EnsemblRapid:ENSXLAG00005006095 AllianceGenome:Xenbase:XB-GENE-866621
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable translation activator activity. Predicted to act upstream of or within regulation of translational initiation. Predicted to be located in cytoplasm. Orthologous to human PAIP1 (poly(A) binding protein interacting protein 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See paip1.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (183636841..183662897)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (163795791..163822015)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor 10 S homeolog Neighboring gene nicotinamide nucleotide transhydrogenase S homeolog Neighboring gene transmembrane protein 267 S homeolog Neighboring gene 3-hydroxy-3-methylglutaryl-CoA synthase 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Embryonic poly(A)-binding protein stimulates translation in germ cells. Wilkie GS, et al. Mol Cell Biol, 2005 Mar. PMID 15713657, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53704, MGC154295

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables translation activator activity IEA
Inferred from Electronic Annotation
more info
  
enables translation activator activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of translation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of translational initiation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
polyadenylate-binding protein-interacting protein 1
Names
PABP-interacting protein 1
PAIP-1
paip1
poly(A)-binding protein-interacting protein 1
xlPaip1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087062.1 → NP_001080531.1  polyadenylate-binding protein-interacting protein 1

    See identical proteins and their annotated locations for NP_001080531.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123119
    UniProtKB/Swiss-Prot
    Q0IHK4, Q7ZYB4
    UniProtKB/TrEMBL
    A0A974DXG0
    Related
    ENSXLAP00005018209.1, ENSXLAT00005018505.1
    Conserved Domains (1) summary
    pfam02854
    Location:146 → 362
    MIF4G; MIF4G domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    183636841..183662897
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041573246.1 → XP_041429180.1  polyadenylate-binding protein-interacting protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8J1LKG1, A0A974DXG0
    Conserved Domains (1) summary
    smart00543
    Location:151 → 367
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7ZYB4.1 GenPept UniProtKB/Swiss-Prot:Q7ZYB4

Gene LinkOut

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Molecular Biology Databases
Research Materials