syap1.S synapse associated protein 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: syap1.S
Official Full Name: synapse associated protein 1 S homeolog
Primary source: Xenbase:XB-GENE-17345160
Locus tag: XELAEV_18015325mg
See related: EnsemblRapid:ENSXLAG00005003916 AllianceGenome:Xenbase:XB-GENE-17345160
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: syap1
Summary: Predicted to act upstream of or within TORC2 signaling and regulation of short-term neuronal synaptic plasticity. Predicted to be located in Golgi apparatus; nucleus; and synapse. Orthologous to human SYAP1 (synapse associated protein 1). [provided by Alliance of Genome Resources, Nov 2024]
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 2S

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2S	NC_054374.1 (86501306..86508915, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	2S	NC_030727.1 (77865789..77873414, complement)

Chromosome 2S - NC_054374.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help

Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within TORC2 signaling	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of short-term neuronal synaptic plasticity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
located_in synapse	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: synapse associated protein 1

Names: synapse associated protein 1, SAP47 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001087038.1 → NP_001080507.1 synapse associated protein 1

See identical proteins and their annotated locations for NP_001080507.1

Status: PROVISIONAL

Source sequence(s)

BC043829

UniProtKB/TrEMBL

A0A974HVU5, Q7ZYD8

Related

ENSXLAP00005011707.1, ENSXLAT00005011881.1

Conserved Domains (1) summary

smart00751
Location:173 → 223

BSD; domain in transcription factors and synapse-associated proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

86501306..86508915 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)