cnn3.L calponin 3, acidic L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: cnn3.L
Official Full Name: calponin 3, acidic L homeolog
Primary source: Xenbase:XB-GENE-951272
Locus tag: XELAEV_18023296mg
See related: EnsemblRapid:ENSXLAG00005027236 AllianceGenome:Xenbase:XB-GENE-951272
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: cnn3
Summary: Predicted to enable actin filament binding activity and calmodulin binding activity. Predicted to act upstream of or within actin filament organization and actomyosin structure organization. Predicted to be located in actin cytoskeleton. Orthologous to human CNN3 (calponin 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 4L

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	4L	NC_054377.1 (97493296..97514616, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	4L	NC_030730.1 (92229033..92250355, complement)

Chromosome 4L - NC_054377.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables actin binding	IEA Inferred from Electronic Annotation more info
enables actin filament binding	IEA Inferred from Electronic Annotation more info
enables calmodulin binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within actin filament organization	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within actomyosin structure organization	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in actin cytoskeleton	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: calponin 3, acidic L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001087013.1 → NP_001080482.1 calponin 3, acidic L homeolog

See identical proteins and their annotated locations for NP_001080482.1

Status: PROVISIONAL

Source sequence(s)

BC043808

UniProtKB/TrEMBL

A0A974D6C1, Q7ZYF5

Related

ENSXLAP00005081163.1, ENSXLAT00005082774.1

Conserved Domains (3) summary

COG5199
Location:16 → 188

SCP1; Calponin [Cytoskeleton]

pfam00307
Location:27 → 125

CH; Calponin homology (CH) domain

pfam00402
Location:164 → 187

Calponin; Calponin family repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

97493296..97514616 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)