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ncaph.L non-SMC condensin I complex subunit H L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380142, updated on 17-Aug-2024

Summary

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Official Symbol
ncaph.L
Official Full Name
non-SMC condensin I complex subunit H L homeolog
Primary source
Xenbase:XB-GENE-17333138
Locus tag
XELAEV_18018580mg
See related
EnsemblRapid:ENSXLAG00005000877
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
brrn1; cap-h
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: 3L
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (132774083..132790207)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (117401089..117417286)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein, U5 200kDa subunit L homeolog Neighboring gene nucleoporin 133kDa L homeolog Neighboring gene serine/threonine-protein kinase 10-like Neighboring gene neuralized E3 ubiquitin protein ligase 3 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC69107

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within chromosome condensation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mitotic chromosome condensation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  
part_of condensin complex IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
non-SMC condensin I complex subunit H L homeolog
Names
barren homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086981.1 → NP_001080450.1  non-SMC condensin I complex subunit H L homeolog

    See identical proteins and their annotated locations for NP_001080450.1

    Status: PROVISIONAL

    Source sequence(s)
    BC056095
    UniProtKB/TrEMBL
    Q6NUE8, Q7T0P8
    Related
    ENSXLAP00005002609.1, ENSXLAT00005002661.1
    Conserved Domains (1) summary
    pfam05786
    Location:32 → 685
    Cnd2; Condensin complex subunit 2

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    132774083..132790207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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