sec13.S SEC13 homolog, nuclear pore and COPII coat complex component S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: sec13.S
Official Full Name: SEC13 homolog, nuclear pore and COPII coat complex component S homeolog
Primary source: Xenbase:XB-GENE-944458
Locus tag: XELAEV_18025861mg
See related: EnsemblRapid:ENSXLAG00005016956 AllianceGenome:Xenbase:XB-GENE-944458
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: sec13; sec13l1
Summary: Predicted to enable structural molecule activity. Predicted to act upstream of or within several processes, including COPII-coated vesicle budding; intracellular protein transport; and positive regulation of TOR signaling. Predicted to be located in cytosol. Predicted to be part of COPII vesicle coat and nuclear pore outer ring. Orthologous to human SEC13 (SEC13 homolog, nuclear pore and COPII coat complex component). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 4S

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	4S	NC_054378.1 (110880624..110895594, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	4S	NC_030731.1 (104419854..104434814, complement)

Chromosome 4S - NC_054378.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables structural molecule activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within COPII-coated vesicle budding	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within mRNA transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within positive regulation of TOR signaling	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within protein exit from endoplasmic reticulum	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within protein import into nucleus	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within protein transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of COPII vesicle coat	IEA Inferred from Electronic Annotation more info
located_in cytosol	TAS Traceable Author Statement more info
located_in lysosomal membrane	IEA Inferred from Electronic Annotation more info
located_in lysosome	IEA Inferred from Electronic Annotation more info
part_of nuclear pore	IEA Inferred from Electronic Annotation more info
part_of nuclear pore outer ring	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: SEC13 homolog, nuclear pore and COPII coat complex component S homeolog

Names: SEC13 homolog, nuclear pore and COPII coating complex component; SEC13-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086973.1 → NP_001080442.1 SEC13 homolog, nuclear pore and COPII coat complex component S homeolog

See identical proteins and their annotated locations for NP_001080442.1

Status: PROVISIONAL

Source sequence(s)

BC043755

UniProtKB/TrEMBL

A0A974D2U3, Q7ZYJ8

Related

ENSXLAP00005049930.1, ENSXLAT00005051071.1

Conserved Domains (2) summary

sd00039
Location:61 → 101

7WD40; WD40 repeat [structural motif]

cl29593
Location:10 → 288

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

110880624..110895594 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)