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col6a1.L collagen, type VI, alpha 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380129, updated on 17-Aug-2024

Summary

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Official Symbol
col6a1.L
Official Full Name
collagen, type VI, alpha 1 L homeolog
Primary source
Xenbase:XB-GENE-998859
Locus tag
XELAEV_18044800mg
See related
EnsemblRapid:ENSXLAG00005027603
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
col6a1
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Genomic context

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See col6a1.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
35
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (81859596..81901971)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (71360834..71403682)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene reduced folate transporter Neighboring gene poly(rC) binding protein 1 L homeolog Neighboring gene collagen, type VI, alpha 2 L homeolog Neighboring gene formimidoyltransferase cyclodeaminase L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53502

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
collagen alpha-1(VI) chain
Names
Collagen alpha-1(VI) chain
procollagen, type VI, alpha 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    81859596..81901971
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018234101.2 → XP_018089590.1  collagen alpha-1(VI) chain

    UniProtKB/Swiss-Prot
    Q801S8
    UniProtKB/TrEMBL
    A0A1L8EWI9, A0A974BZD6
    Related
    ENSXLAP00005082357.1, ENSXLAT00005083991.1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001086968.1: Suppressed sequence

    Description
    NM_001086968.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q801S8.1 GenPept UniProtKB/Swiss-Prot:Q801S8

Gene LinkOut

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