psmb1.S proteasome subunit beta 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: psmb1.S
Official Full Name: proteasome subunit beta 1 S homeolog
Primary source: Xenbase:XB-GENE-970609
Locus tag: XELAEV_18029019mg
See related: EnsemblRapid:ENSXLAG00005006945
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: psmb1
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Genomic context

Location:: chromosome: 5S

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	5S	NC_054380.1 (41898721..41907052, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	5S	NC_030733.1 (41756455..41764802, complement)

Chromosome 5S - NC_054380.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within proteolysis involved in protein catabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of proteasome complex	IEA Inferred from Electronic Annotation more info
part_of proteasome core complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: proteasome beta 1 subunit

Names: proteasome (prosome, macropain) subunit, beta type, 1

NP_001080435.1

EC 3.4.25.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086966.1 → NP_001080435.1 proteasome beta 1 subunit

See identical proteins and their annotated locations for NP_001080435.1

Status: PROVISIONAL

Source sequence(s)

BC043739

UniProtKB/TrEMBL

A0A974CSA5, Q7ZYL1

Related

ENSXLAP00005020268.1, ENSXLAT00005020735.1

Conserved Domains (2) summary

TIGR03690
Location:35 → 231

20S_bact_beta; proteasome, beta subunit, bacterial type

cd03757
Location:28 → 239

proteasome_beta_type_1; proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

41898721..41907052 complement

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GenBank, FASTA, Sequence Viewer (Graphics)