tfg.S trafficking from ER to golgi regulator S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: tfg.S
Official Full Name: trafficking from ER to golgi regulator S homeolog
Primary source: Xenbase:XB-GENE-960563
Locus tag: XELAEV_18015451mg
See related: EnsemblRapid:ENSXLAG00005001350
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: tfg; tfgb; xtfg; tfg-a; tfg-b
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 2S

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2S	NC_054374.1 (97085806..97102542, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	2S	NC_030727.1 (88020799..88037567, complement)

Chromosome 2S - NC_054374.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables identical protein binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within COPII vesicle coating	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in endoplasmic reticulum exit site	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: trk-fused b

Names: trk-fused gene S homeolog; trk-fused gene b

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086952.1 → NP_001080421.1 trk-fused b

See identical proteins and their annotated locations for NP_001080421.1

Status: PROVISIONAL

Source sequence(s)

BC044079

UniProtKB/TrEMBL

Q7ZXX5, Q9DGF6

Related

ENSXLAP00005004116.1, ENSXLAT00005004182.1

Conserved Domains (2) summary

cd06401
Location:11 → 91

PB1_TFG; The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in ...

pfam17093
Location:334 → 389

PBP_N; Penicillin-binding protein N-terminus

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

97085806..97102542 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)