tgif1.S TGFB induced factor homeobox 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: tgif1.S
Official Full Name: TGFB induced factor homeobox 1 S homeolog
Primary source: Xenbase:XB-GENE-853028
Locus tag: XELAEV_18033618mg
See related: EnsemblRapid:ENSXLAG00005027167
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: tgif; tgif1
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Genomic context

Location:: chromosome: 6S

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	6S	NC_054382.1 (93032312..93047818, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	6S	NC_030735.1 (84342071..84357577, complement)

Chromosome 6S - NC_054382.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription repressor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within animal organ development	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: TGFB induced factor homeobox 1 S homeolog

Names: TGFB-induced factor (TALE family homeobox)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086951.1 → NP_001080420.1 TGFB induced factor homeobox 1 S homeolog

See identical proteins and their annotated locations for NP_001080420.1

Status: PROVISIONAL

Source sequence(s)

BC044016

UniProtKB/TrEMBL

A0A974CJY7, Q7ZY20

Related

ENSXLAP00005080873.1, ENSXLAT00005082479.1

Conserved Domains (1) summary

pfam05920
Location:53 → 92

Homeobox_KN; Homeobox KN domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

93032312..93047818 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)