arpc1b.L actin related protein 2/3 complex subunit 1B L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: arpc1b.L
Official Full Name: actin related protein 2/3 complex subunit 1B L homeolog
Primary source: Xenbase:XB-GENE-490414
Locus tag: XELAEV_18045069mg
See related: EnsemblRapid:ENSXLAG00005025805
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: arc41; arpc1b; p40-arc; p41-arc; arpc1b-a; arpc1b-b; arx-3and3n122
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Genomic context

Location:: chromosome: 9_10L

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10L	NC_054387.1 (95689281..95705879, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10L	NC_030740.1 (85110925..85127539, complement)

Chromosome 9_10L - NC_054387.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables actin binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within Arp2/3 complex-mediated actin nucleation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of Arp2/3 protein complex	IEA Inferred from Electronic Annotation more info
located_in actin cytoskeleton	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoskeleton	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: actin-related protein 2/3 complex subunit 1B-A

Names: Actin-related protein 2/3 complex subunit 1B-A; actin related protein 2/3 complex, subunit 1B, 41kDa; actin-related protein 2/3 complex subunit 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086947.1 → NP_001080416.1 actin-related protein 2/3 complex subunit 1B-A

See identical proteins and their annotated locations for NP_001080416.1

Status: PROVISIONAL

Source sequence(s)

BC045043

UniProtKB/Swiss-Prot

A1DPL3, Q7ZXD5

Related

ENSXLAP00005076944.1, ENSXLAT00005078535.1

Conserved Domains (2) summary

sd00039
Location:11 → 50

7WD40; WD40 repeat [structural motif]

cl25539
Location:45 → 281

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

95689281..95705879 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041575507.1 → XP_041431441.1 actin-related protein 2/3 complex subunit 1B-A isoform X1

UniProtKB/TrEMBL

A0A8J1LQP8

Related

ENSXLAP00005076686.1, ENSXLAT00005078277.1

Conserved Domains (2) summary

sd00039
Location:51 → 88

7WD40; WD40 repeat [structural motif]

cl29593
Location:40 → 276

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...