rbms1.S RNA binding motif, single stranded interacting protein 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: rbms1.S
Official Full Name: RNA binding motif, single stranded interacting protein 1 S homeolog
Primary source: Xenbase:XB-GENE-1011130
Locus tag: XELAEV_18047128mg
See related: EnsemblRapid:ENSXLAG00005027953
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: rbms1
Annotation information: Annotation category: partial on reference assembly
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Genomic context

Location:: chromosome: 9_10S

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10S	NC_054388.1 (62645171..62748837, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10S	NC_030741.1 (55975170..56079025, complement)

Chromosome 9_10S - NC_054388.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables mRNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within mRNA processing	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: RNA binding motif, single stranded interacting protein 1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086938.1 → NP_001080407.1 RNA binding motif, single stranded interacting protein 1 S homeolog

See identical proteins and their annotated locations for NP_001080407.1

Status: PROVISIONAL

Source sequence(s)

BC043623

UniProtKB/TrEMBL

A0A974H1J6, Q7ZYN0

Related

ENSXLAP00005083131.1, ENSXLAT00005084769.1

Conserved Domains (3) summary

pfam05568
Location:264 → 371

ASFV_J13L; African swine fever virus J13L protein

cd12474
Location:109 → 194

RRM2_MSSP2; RNA recognition motif 2 found in vertebrate single-stranded DNA-binding protein MSSP-2

cl17169
Location:23 → 108

RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

62645171..62748837 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)