U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

tnnt3.S troponin T3, fast skeletal type S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380095, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
tnnt3.S
Official Full Name
troponin T3, fast skeletal type S homeolog
Primary source
Xenbase:XB-GENE-17337869
Locus tag
XELAEV_18024361mg
See related
EnsemblRapid:ENSXLAG00005006206
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tnnt3; tnnt3a
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See tnnt3.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (7673231..7695242, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (7504575..7527122, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L23 S homeolog Neighboring gene general transcription factor II-I repeat domain-containing protein 2B Neighboring gene lymphocyte specific protein 1 S homeolog Neighboring gene troponin I2, fast skeletal type S homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC53065, MGC132356

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables tropomyosin binding IEA
Inferred from Electronic Annotation
more info
  
enables troponin C binding IEA
Inferred from Electronic Annotation
more info
  
enables troponin I binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of muscle contraction IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sarcomere organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within skeletal muscle contraction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of troponin complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
troponin T3, fast skeletal type S homeolog
Names
troponin T type 3 (skeletal, fast) S homeolog
troponin T3, skeletal, fast

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086934.1 → NP_001080403.1  troponin T3, fast skeletal type S homeolog

    See identical proteins and their annotated locations for NP_001080403.1

    Status: PROVISIONAL

    Source sequence(s)
    BC044998
    UniProtKB/TrEMBL
    A0A974CYQ7, Q7T2Z8, Q7ZXG9
    Conserved Domains (1) summary
    pfam00992
    Location:81 → 217
    Troponin; Troponin

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    7673231..7695242 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018259404.2 → XP_018114893.1  troponin T3, fast skeletal type S homeolog isoform X8

    UniProtKB/TrEMBL
    A0A8J0V8K3, Q71N35

  2. XM_041591171.1 → XP_041447105.1  troponin T3, fast skeletal type S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1N1L2, Q71N35, Q7T2Z8
    Related
    ENSXLAP00005018511.1, ENSXLAT00005018844.1
    Conserved Domains (1) summary
    pfam00992
    Location:82 → 218
    Troponin

  3. XM_041591174.1 → XP_041447108.1  troponin T3, fast skeletal type S homeolog isoform X5

    UniProtKB/TrEMBL
    A0A8J1N0U4, Q71N35
    Conserved Domains (1) summary
    PLN02316
    Location:58 → 172
    PLN02316; synthase/transferase

  4. XM_018259399.2 → XP_018114888.1  troponin T3, fast skeletal type S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0V4M9, Q71N35, Q7T2Z8

  5. XM_041591187.1 → XP_041447121.1  troponin T3, fast skeletal type S homeolog isoform X20

    UniProtKB/TrEMBL
    A0A8J1N059, Q71N35
    Conserved Domains (1) summary
    PLN02316
    Location:29 → 143
    PLN02316; synthase/transferase

  6. XM_018259409.2 → XP_018114898.1  troponin T3, fast skeletal type S homeolog isoform X13

    UniProtKB/TrEMBL
    A0A8J0V472, Q71N35

  7. XM_041591179.1 → XP_041447113.1  troponin T3, fast skeletal type S homeolog isoform X10

    UniProtKB/TrEMBL
    A0A8J1N0U9, Q71N35
    Related
    ENSXLAP00005018583.1, ENSXLAT00005018918.1
    Conserved Domains (1) summary
    TIGR02168
    Location:69 → 248
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  8. XM_041591186.1 → XP_041447120.1  troponin T3, fast skeletal type S homeolog isoform X19

    UniProtKB/TrEMBL
    A0A974D074, A8E5Y2, Q71N35
    Related
    ENSXLAP00005018558.1, ENSXLAT00005018893.1
    Conserved Domains (1) summary
    pfam00992
    Location:49 → 185
    Troponin

  9. XM_041591184.1 → XP_041447118.1  troponin T3, fast skeletal type S homeolog isoform X16

    UniProtKB/TrEMBL
    A0A8J1N0V4
    Conserved Domains (1) summary
    TIGR02168
    Location:51 → 230
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  10. XM_041591180.1 → XP_041447114.1  troponin T3, fast skeletal type S homeolog isoform X11

    UniProtKB/TrEMBL
    A0A8J1MZ00, Q71N35
    Conserved Domains (1) summary
    TIGR02168
    Location:58 → 237
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  11. XM_041591176.1 → XP_041447110.1  troponin T3, fast skeletal type S homeolog isoform X7

    UniProtKB/TrEMBL
    A0A8J1N1L7, Q71N35
    Conserved Domains (1) summary
    TIGR02168
    Location:75 → 254
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  12. XM_041591175.1 → XP_041447109.1  troponin T3, fast skeletal type S homeolog isoform X6

    UniProtKB/TrEMBL
    A0A8J1MYZ5, Q71N35
    Conserved Domains (1) summary
    TIGR02168
    Location:75 → 254
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  13. XM_018259411.2 → XP_018114900.1  troponin T3, fast skeletal type S homeolog isoform X18

    UniProtKB/TrEMBL
    A0A8J0UZF0, Q71N35

  14. XM_041591178.1 → XP_041447112.1  troponin T3, fast skeletal type S homeolog isoform X9

    UniProtKB/TrEMBL
    A0A8J1MZ90, Q71N35
    Related
    ENSXLAP00005018579.1, ENSXLAT00005018914.1
    Conserved Domains (1) summary
    TIGR02168
    Location:71 → 250
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  15. XM_041591190.1 → XP_041447124.1  troponin T3, fast skeletal type S homeolog isoform X23

    UniProtKB/TrEMBL
    A0A8J1MZ11, Q71N35
    Conserved Domains (1) summary
    PLN02316
    Location:28 → 142
    PLN02316; synthase/transferase

  16. XM_041591183.1 → XP_041447117.1  troponin T3, fast skeletal type S homeolog isoform X15

    UniProtKB/TrEMBL
    A0A8J1MZ94, Q71N35
    Conserved Domains (1) summary
    TIGR02168
    Location:53 → 232
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  17. XM_041591191.1 → XP_041447125.1  troponin T3, fast skeletal type S homeolog isoform X24

    UniProtKB/TrEMBL
    A0A8J1N1N4, Q71N35
    Conserved Domains (1) summary
    PLN02316
    Location:28 → 142
    PLN02316; synthase/transferase

  18. XM_041591182.1 → XP_041447116.1  troponin T3, fast skeletal type S homeolog isoform X14

    UniProtKB/TrEMBL
    A0A8J1N055, Q71N35
    Conserved Domains (1) summary
    TIGR02168
    Location:53 → 232
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  19. XM_041591181.1 → XP_041447115.1  troponin T3, fast skeletal type S homeolog isoform X12

    UniProtKB/TrEMBL
    A0A8J1N1M3, Q71N35
    Conserved Domains (1) summary
    TIGR02168
    Location:57 → 236
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  20. XM_041591172.1 → XP_041447106.1  troponin T3, fast skeletal type S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1N046, Q7T2Z8
    Conserved Domains (1) summary
    TIGR02168
    Location:79 → 258
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  21. XM_041591193.1 → XP_041447127.1  troponin T3, fast skeletal type S homeolog isoform X26

    UniProtKB/TrEMBL
    A0A8J1MZA2, Q71N35
    Conserved Domains (1) summary
    PLN02316
    Location:18 → 132
    PLN02316; synthase/transferase

  22. XM_041591188.1 → XP_041447122.1  troponin T3, fast skeletal type S homeolog isoform X21

    UniProtKB/TrEMBL
    A0A8J1MZ99, Q71N35
    Conserved Domains (1) summary
    TIGR02168
    Location:46 → 225
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  23. XM_041591189.1 → XP_041447123.1  troponin T3, fast skeletal type S homeolog isoform X22

    UniProtKB/TrEMBL
    A0A8J1N0W2, Q71N35
    Conserved Domains (1) summary
    TIGR02168
    Location:46 → 225
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  24. XM_041591185.1 → XP_041447119.1  troponin T3, fast skeletal type S homeolog isoform X17

    UniProtKB/TrEMBL
    A0A8J1MZ05, Q71N35
    Conserved Domains (1) summary
    TIGR02168
    Location:50 → 229
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  25. XM_041591173.1 → XP_041447107.1  troponin T3, fast skeletal type S homeolog isoform X4

    UniProtKB/TrEMBL
    Q32N26, Q71N35
    Related
    ENSXLAP00005018471.1, ENSXLAT00005018797.1
    Conserved Domains (1) summary
    pfam00992
    Location:78 → 214
    Troponin

  26. XM_041591194.1 → XP_041447128.1  troponin T3, fast skeletal type S homeolog isoform X27

    UniProtKB/TrEMBL
    A0A8J1N0W7, Q71N35
    Related
    ENSXLAP00005018546.1, ENSXLAT00005018881.1
    Conserved Domains (1) summary
    TIGR02168
    Location:36 → 215
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  27. XM_041591192.1 → XP_041447126.1  troponin T3, fast skeletal type S homeolog isoform X25

    UniProtKB/TrEMBL
    A0A8J1N064, Q71N35
    Related
    ENSXLAP00005018569.1, ENSXLAT00005018905.1
    Conserved Domains (1) summary
    TIGR02168
    Location:42 → 221
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.