klhdc3.L kelch domain containing 3 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: klhdc3.L
Official Full Name: kelch domain containing 3 L homeolog
Primary source: Xenbase:XB-GENE-5879442
Locus tag: XELAEV_18026442mg
See related: EnsemblRapid:ENSXLAG00005027635
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: klhdc3
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Genomic context

Location:: chromosome: 5L

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	5L	NC_054379.1 (24996313..25015805, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	5L	NC_030732.1 (24191022..24210697, complement)

Chromosome 5L - NC_054379.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables chromatin binding	IEA Inferred from Electronic Annotation more info
enables chromatin binding	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in chromatin	ISS Inferred from Sequence or Structural Similarity more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: kelch domain containing 3 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086933.1 → NP_001080402.1 kelch domain containing 3 L homeolog

See identical proteins and their annotated locations for NP_001080402.1

Status: PROVISIONAL

Source sequence(s)

BC056132

UniProtKB/TrEMBL

A0A974CTV9, Q7T0L8

Related

ENSXLAP00005082199.1, ENSXLAT00005083821.1

Conserved Domains (5) summary

sd00038
Location:176 → 231

Kelch; KELCH repeat [structural motif]

pfam13415
Location:82 → 132

Kelch_3; Galactose oxidase, central domain

pfam13418
Location:13 → 61

Kelch_4; Galactose oxidase, central domain

pfam13854
Location:121 → 160

Kelch_5; Kelch motif

pfam13964
Location:235 → 277

Kelch_6; Kelch motif

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

24996313..25015805 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_018261660.2 → XP_018117149.1 kelch domain containing 3 L homeolog isoform X1

UniProtKB/TrEMBL

A0A974CTV9, Q7T0L8
XM_018261659.2 → XP_018117148.1 kelch domain containing 3 L homeolog isoform X1

UniProtKB/TrEMBL

A0A974CTV9, Q7T0L8