bop1.L BOP1 ribosomal biogenesis factor L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: bop1.L
Official Full Name: BOP1 ribosomal biogenesis factor L homeolog
Primary source: Xenbase:XB-GENE-6254226
Locus tag: XELAEV_18032519mg
See related: EnsemblRapid:ENSXLAG00005024861
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: bop1; bop1-B; bop1-a; MCG5033
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Genomic context

Location:: chromosome: 6L

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	6L	NC_054381.1 (162738679..162768961)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	6L	NC_030734.1 (153615040..153645565)

Chromosome 6L - NC_054381.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Bop1 is required to establish precursor domains of craniofacial tissues.
Title: Bop1 is required to establish precursor domains of craniofacial tissues.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables ribonucleoprotein complex binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within rRNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of cell cycle	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within ribosomal large subunit biogenesis	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within ribosome biogenesis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of PeBoW complex	ISS Inferred from Sequence or Structural Similarity more info
located_in nucleolus	IEA Inferred from Electronic Annotation more info
located_in nucleoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of preribosome, large subunit precursor	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ribosome biogenesis protein bop1-B

Names: block of proliferation 1 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086889.1 → NP_001080358.1 ribosome biogenesis protein bop1-B

See identical proteins and their annotated locations for NP_001080358.1

Status: PROVISIONAL

Source sequence(s)

BC044074

UniProtKB/Swiss-Prot

Q7ZXX9

UniProtKB/TrEMBL

A0A974CPR3

Related

ENSXLAP00005073696.1, ENSXLAT00005075261.1

Conserved Domains (6) summary

COG2319
Location:384 → 727

WD40; WD40 repeat [General function prediction only]

pfam08145
Location:126 → 384

BOP1NT; BOP1NT (NUC169) domain

pfam14797
Location:22 → 112

SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex

pfam14950
Location:9 → 147

DUF4502; Domain of unknown function (DUF4502)

sd00039
Location:399 → 437

7WD40; WD40 repeat [structural motif]

cl02567
Location:391 → 727

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

162738679..162768961

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041565278.1 → XP_041421212.1 ribosome biogenesis protein bop1-B isoform X1

UniProtKB/TrEMBL

A0A8J1KV72, A0A974CPR3

Related

ENSXLAP00005073644.1, ENSXLAT00005075209.1

Conserved Domains (3) summary

smart01035
Location:30 → 288

BOP1NT; BOP1NT (NUC169) domain

sd00039
Location:303 → 341

7WD40; WD40 repeat [structural motif]

cl29593
Location:295 → 631

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...