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dars1.S aspartyl-tRNA synthetase 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380028, updated on 4-Nov-2024

Summary

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Official Symbol
dars1.S
Official Full Name
aspartyl-tRNA synthetase 1 S homeolog
Primary source
Xenbase:XB-GENE-17339865
Locus tag
XELAEV_18047056mg
See related
EnsemblRapid:ENSXLAG00005014209 AllianceGenome:Xenbase:XB-GENE-17339865
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
dars; dars.S
Summary
Predicted to enable ATP binding activity; RNA binding activity; and aspartate-tRNA ligase activity. Predicted to act upstream of or within aspartyl-tRNA aminoacylation. Predicted to be located in cytosol. Predicted to be part of aminoacyl-tRNA synthetase multienzyme complex. Orthologous to human DARS1 (aspartyl-tRNA synthetase 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See dars1.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (55020564..55081487, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (48345326..48406415, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene transmembrane BAX inhibitor motif containing 1 S homeolog Neighboring gene minichromosome maintenance complex component 6 S homeolog Neighboring gene C-X-C motif chemokine receptor 4 S homeolog Neighboring gene thrombospondin type 1 domain containing 7B S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53970

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables aspartate-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within aspartyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of aminoacyl-tRNA synthetase multienzyme complex IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
aspartyl-tRNA synthetase 1 S homeolog
Names
aspartyl-tRNA synthetase S homeolog
NP_001080336.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086867.1 → NP_001080336.1  aspartyl-tRNA synthetase 1 S homeolog

    See identical proteins and their annotated locations for NP_001080336.1

    Status: PROVISIONAL

    Source sequence(s)
    BC042227
    UniProtKB/TrEMBL
    A0A974BUF0, Q8AVK0
    Related
    ENSXLAP00005041776.1, ENSXLAT00005042795.1
    Conserved Domains (1) summary
    PLN02850
    Location:9 → 530
    PLN02850; aspartate-tRNA ligase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    55020564..55081487 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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