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ccz1b.S CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380014, updated on 4-Nov-2024

Summary

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Official Symbol
ccz1b.S
Official Full Name
CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated S homeolog
Primary source
Xenbase:XB-GENE-941319
Locus tag
XELAEV_18047614mg
See related
EnsemblRapid:ENSXLAG00005009247 AllianceGenome:Xenbase:XB-GENE-941319
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ccz1; ccz1b; c7orf28b
Summary
Orthologous to human CCZ1B (CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ccz1b.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (96614384..96643251)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (89967820..89996696)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene oncomodulin 4 gene 6 S homeolog Neighboring gene oncomodulin S homeolog Neighboring gene radial spoke head 10 homolog B (Chlamydomonas) S homeolog Neighboring gene aminoacyl tRNA synthetase complex-interacting multifunctional protein 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68831

General protein information

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Preferred Names
vacuolar fusion protein CCZ1 homolog
Names
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated B
CCZ1 vacuolar protein trafficking and biogenesis associated B
CCZ1 vacuolar protein trafficking and biogenesis associated homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086853.1 → NP_001080322.1  vacuolar fusion protein CCZ1 homolog

    See identical proteins and their annotated locations for NP_001080322.1

    Status: PROVISIONAL

    Source sequence(s)
    BC055965
    UniProtKB/Swiss-Prot
    Q7T102
    UniProtKB/TrEMBL
    A0A974BVJ3
    Related
    ENSXLAP00005027040.1, ENSXLAT00005027772.1
    Conserved Domains (1) summary
    pfam08217
    Location:17 → 468
    DUF1712; Fungal domain of unknown function (DUF1712)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    96614384..96643251
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018237235.2 → XP_018092724.1  vacuolar fusion protein CCZ1 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q7T102
    UniProtKB/TrEMBL
    A0A974BVJ3

  2. XM_018237237.2 → XP_018092726.1  vacuolar fusion protein CCZ1 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q7T102
    UniProtKB/TrEMBL
    A0A974BVJ3

  3. XM_018237236.2 → XP_018092725.1  vacuolar fusion protein CCZ1 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q7T102
    UniProtKB/TrEMBL
    A0A974BVJ3
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7T102.1 GenPept UniProtKB/Swiss-Prot:Q7T102

Gene LinkOut

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