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nt5dc2.L 5'-nucleotidase domain containing 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380012, updated on 4-Nov-2024

Summary

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Official Symbol
nt5dc2.L
Official Full Name
5'-nucleotidase domain containing 2 L homeolog
Primary source
Xenbase:XB-GENE-17332095
Locus tag
XELAEV_18038572mg
See related
EnsemblRapid:ENSXLAG00005029774 AllianceGenome:Xenbase:XB-GENE-17332095
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
nt5dc2-b
Summary
Predicted to enable 5'-nucleotidase activity and metal ion binding activity. Orthologous to human NT5DC2 (5'-nucleotidase domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See nt5dc2.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (24921266..24960922, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (16822384..16862056)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene renin binding protein L homeolog Neighboring gene uncharacterized LOC121396907 Neighboring gene transmembrane protein 35 L homeolog Neighboring gene ARF like GTPase 13A L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables 5'-nucleotidase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
5'-nucleotidase domain containing 2
Names
5'-nucleotidase domain containing 2 b
NP_001080320.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086851.1 → NP_001080320.2  5'-nucleotidase domain containing 2

    Status: PROVISIONAL

    Source sequence(s)
    BC046742
    UniProtKB/TrEMBL
    A0A8J0PQ66, A0A974C6E4
    Related
    ENSXLAP00005089444.1, ENSXLAT00005091113.1
    Conserved Domains (2) summary
    pfam00702
    Location:206 → 422
    Hydrolase; haloacid dehalogenase-like hydrolase
    pfam05761
    Location:128 → 560
    5_nucleotid; 5' nucleotidase family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    24921266..24960922 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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