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hnrnpc.S heterogeneous nuclear ribonucleoprotein C (C1/C2) S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379948, updated on 11-Apr-2024

Summary

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Official Symbol
hnrnpc.S
Official Full Name
heterogeneous nuclear ribonucleoprotein C (C1/C2) S homeolog
Primary source
Xenbase:XB-GENE-17330606
Locus tag
XELAEV_18010325mg
See related
EnsemblRapid:ENSXLAG00005011706
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
hnrnp; hnrpc; snrpc
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Genomic context

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See hnrnpc.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (132512589..132530694)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (117024713..117043083)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108698817 Neighboring gene poly(ADP-ribose) polymerase 2 S homeolog Neighboring gene uncharacterized LOC121398238 Neighboring gene NDRG family member 2 S homeolog Neighboring gene putative uncharacterized protein DDB_G0271982

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53243

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
heterogeneous nuclear ribonucleoprotein C (C1/C2) S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086787.1 → NP_001080256.1  heterogeneous nuclear ribonucleoprotein C (C1/C2) S homeolog

    See identical proteins and their annotated locations for NP_001080256.1

    Status: PROVISIONAL

    Source sequence(s)
    BC041534
    UniProtKB/TrEMBL
    Q8AVP9
    Conserved Domains (2) summary
    COG0724
    Location:8 → 95
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12603
    Location:16 → 86
    RRM_hnRNPC; RNA recognition motif in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    132512589..132530694
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018233547.2 → XP_018089036.1  heterogeneous nuclear ribonucleoprotein C (C1/C2) S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A1L8HPW0, A0A974DWF6
    Related
    ENSXLAP00005034140.1, ENSXLAT00005035023.1

  2. XM_018233555.2 → XP_018089044.1  heterogeneous nuclear ribonucleoprotein C (C1/C2) S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A1L8HPW0, A0A974DWF6

  3. XM_041573046.1 → XP_041428980.1  heterogeneous nuclear ribonucleoprotein C (C1/C2) S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1LJV5
    Conserved Domains (1) summary
    smart00360
    Location:28 → 93
    RRM; RNA recognition motif

  4. XM_041573037.1 → XP_041428971.1  heterogeneous nuclear ribonucleoprotein C (C1/C2) S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LHZ0
    Related
    ENSXLAP00005034147.1, ENSXLAT00005035030.1
    Conserved Domains (1) summary
    smart00360
    Location:28 → 93
    RRM; RNA recognition motif
Nucleotide Protein Strain
Heading Accession and Version

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