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tmod3.S tropomodulin 3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379934, updated on 17-Aug-2024

Summary

Official Symbol
tmod3.S
Official Full Name
tropomodulin 3 S homeolog
Primary source
Xenbase:XB-GENE-944522
Locus tag
XELAEV_18020632mg
See related
EnsemblRapid:ENSXLAG00005005308
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tmod3
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Genomic context

Location:
chromosome: 3S
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (51943048..51975370)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (50677415..50712045)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene secretogranin III S homeolog Neighboring gene LysM, putative peptidoglycan-binding, domain containing 2 S homeolog Neighboring gene LEO1 homolog, Paf1/RNA polymerase II complex component S homeolog Neighboring gene mitogen-activated protein kinase 6 S homeolog

Genomic regions, transcripts, and products

General protein information

Preferred Names
tropomodulin 3 S homeolog
Names
tropomodulin 3 (ubiquitous)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086773.1NP_001080242.1  tropomodulin 3 S homeolog

    See identical proteins and their annotated locations for NP_001080242.1

    Status: PROVISIONAL

    Source sequence(s)
    BC047163
    UniProtKB/TrEMBL
    Q7ZWK9
    Related
    ENSXLAP00005015674.1, ENSXLAT00005015960.1
    Conserved Domains (2) summary
    cd00116
    Location:208284
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    pfam03250
    Location:6144
    Tropomodulin; Tropomodulin

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    51943048..51975370
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041587500.1XP_041443434.1  tropomodulin 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GSW1, A0A974HQM1
    Related
    ENSXLAP00005015684.1, ENSXLAT00005015970.1
    Conserved Domains (2) summary
    pfam03250
    Location:54192
    Tropomodulin
    cl39015
    Location:234332
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...