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msantd3.L Myb/SANT DNA binding domain containing 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379925, updated on 17-Aug-2024

Summary

Official Symbol
msantd3.L
Official Full Name
Myb/SANT DNA binding domain containing 3 L homeolog
Primary source
Xenbase:XB-GENE-5737853
Locus tag
XELAEV_18031395mg
See related
EnsemblRapid:ENSXLAG00005007810
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
c9orf30; msantd3
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Genomic context

Location:
chromosome: 6L
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (76698904..76744692)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (70656222..70702848)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121394862 Neighboring gene uncharacterized LOC121394660 Neighboring gene uncharacterized LOC108719052 Neighboring gene uncharacterized LOC108719053 Neighboring gene chaperonin containing TCP1, subunit 5 (epsilon) b

Genomic regions, transcripts, and products

General protein information

Preferred Names
myb/SANT-like DNA-binding domain-containing protein 3
Names
Myb/SANT-like DNA-binding domain containing 3 L homeolog
UPF0439 protein C9orf30 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086764.1NP_001080233.1  myb/SANT-like DNA-binding domain-containing protein 3

    See identical proteins and their annotated locations for NP_001080233.1

    Status: PROVISIONAL

    Source sequence(s)
    BC043625
    UniProtKB/Swiss-Prot
    Q7ZYM8
    UniProtKB/TrEMBL
    A0A8J1KY68
    Related
    ENSXLAP00005022306.1, ENSXLAT00005022998.1
    Conserved Domains (1) summary
    pfam13873
    Location:1087
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    76698904..76744692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018266262.2XP_018121751.1  myb/SANT-like DNA-binding domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A1L8FX94, A0A974CP57
    Related
    ENSXLAP00005022332.1, ENSXLAT00005023025.1
  2. XM_041565275.1XP_041421209.1  myb/SANT-like DNA-binding domain-containing protein 3 isoform X2

    UniProtKB/Swiss-Prot
    Q7ZYM8
    UniProtKB/TrEMBL
    A0A8J1KY68
    Conserved Domains (1) summary
    pfam13873
    Location:1087
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain