tra2a.L transformer 2 alpha homolog L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: tra2a.L
Official Full Name: transformer 2 alpha homolog L homeolog
Primary source: Xenbase:XB-GENE-492329
Locus tag: XELAEV_18030927mg
See related: EnsemblRapid:ENSXLAG00005013474
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: tra2a
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Genomic context

Location:: chromosome: 6L

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	6L	NC_054381.1 (41205678..41218706, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	6L	NC_030734.1 (35021418..35035340)

Chromosome 6L - NC_054381.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within positive regulation of mRNA splicing, via spliceosome	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of spliceosomal complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transformer 2 alpha homolog L homeolog

Names: transformer-2 alpha (htra-2 alpha)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086747.1 → NP_001080216.1 transformer 2 alpha homolog L homeolog

See identical proteins and their annotated locations for NP_001080216.1

Status: PROVISIONAL

Source sequence(s)

BC044990

UniProtKB/TrEMBL

A0A974HF77, Q7ZXH5

Related

ENSXLAP00005039745.1, ENSXLAT00005040666.1

Conserved Domains (2) summary

COG0724
Location:96 → 188

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

cd12642
Location:113 → 191

RRM_TRA2A; RNA recognition motif in transformer-2 protein homolog alpha (TRA-2 alpha) and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

41205678..41218706 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041565274.1 → XP_041421208.1 transformer 2 alpha homolog L homeolog isoform X3

UniProtKB/TrEMBL

A0A8J1KWQ8, A0A974HF77

Conserved Domains (1) summary

smart00360
Location:116 → 185

RRM; RNA recognition motif
XM_018266260.2 → XP_018121749.1 transformer 2 alpha homolog L homeolog isoform X2

UniProtKB/TrEMBL

A0A8J0VMH7, A0A974HF77
XM_018266259.2 → XP_018121748.1 transformer 2 alpha homolog L homeolog isoform X1

UniProtKB/TrEMBL

A0A8J0VI93, A0A974HF77