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atp6v0d1.L ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379892, updated on 4-Nov-2024

Summary

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Official Symbol
atp6v0d1.L
Official Full Name
ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 L homeolog
Primary source
Xenbase:XB-GENE-989924
Locus tag
XELAEV_18022497mg
See related
EnsemblRapid:ENSXLAG00005018200 AllianceGenome:Xenbase:XB-GENE-989924
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
atp6d; atp6v0d1
Summary
Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to act upstream of or within proton transmembrane transport; vacuolar acidification; and vacuolar transport. Predicted to be located in early endosome and lysosomal membrane. Predicted to be part of plasma membrane proton-transporting V-type ATPase complex; proton-transporting V-type ATPase, V0 domain; and vacuolar proton-transporting V-type ATPase complex. Orthologous to human ATP6V0D1 (ATPase H+ transporting V0 subunit d1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See atp6v0d1.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (41425939..41472909, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (38927155..38973363, complement)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108713638 Neighboring gene hydroxysteroid (11-beta) dehydrogenase 2 L homeolog Neighboring gene agouti related neuropeptide L homeolog Neighboring gene C-factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53957

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vacuolar acidification IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vacuolar transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
  
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
  
part_of plasma membrane proton-transporting V-type ATPase complex IEA
Inferred from Electronic Annotation
more info
  
part_of proton-transporting V-type ATPase, V0 domain IEA
Inferred from Electronic Annotation
more info
  
part_of vacuolar proton-transporting V-type ATPase complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 L homeolog
NP_001080200.1
XP_041445089.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086731.2 → NP_001080200.1  ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 L homeolog

    See identical proteins and their annotated locations for NP_001080200.1

    Status: PROVISIONAL

    Source sequence(s)
    BC042233
    UniProtKB/TrEMBL
    Q7ZYR4
    Related
    ENSXLAP00005053711.1, ENSXLAT00005054884.1
    Conserved Domains (2) summary
    COG1527
    Location:14 → 350
    NtpC; Archaeal/vacuolar-type H+-ATPase subunit C/Vma6 [Energy production and conversion]
    pfam01992
    Location:16 → 345
    vATP-synt_AC39; ATP synthase (C/AC39) subunit

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    41425939..41472909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041589155.1 → XP_041445089.1  ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GKH1, A0A974HN83
    Conserved Domains (1) summary
    pfam01992
    Location:23 → 351
    vATP-synt_AC39; ATP synthase (C/AC39) subunit
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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