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ctps1.L CTP synthase 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379880, updated on 18-Sep-2024

Summary

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Official Symbol
ctps1.L
Official Full Name
CTP synthase 1 L homeolog
Primary source
Xenbase:XB-GENE-957436
Locus tag
XELAEV_18012070mg
See related
EnsemblRapid:ENSXLAG00005031620
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ctps; ctps1; ctps-b; ctps1-b; ctps1.S
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Genomic context

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See ctps1.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
22
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (60054951..60081420, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (57535646..57560358, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene Scm polycomb group protein homolog 1 L homeolog Neighboring gene palmitoyltransferase ZDHHC20-like Neighboring gene palmitoyltransferase ZDHHC20-like Neighboring gene regulator of chromosome condensation 1 L homeolog Neighboring gene opioid receptor delta 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC52832

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables CTP synthase activity IEA
Inferred from Electronic Annotation
more info
  
enables CTP synthase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
  
enables ligase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within 'de novo' CTP biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within CTP biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within CTP biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within glutamine metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within pyrimidine nucleobase biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within pyrimidine nucleotide biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoophidium IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CTP synthase 1-B
Names
CTP synthase 1 S homeolog
CTP synthetase 1-B
UTP--ammonia ligase 1-B
cytidine 5'-triphosphate synthase
NP_001080188.1
XP_018100290.1
XP_018100291.1
XP_018100292.1
XP_041436799.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086719.1 → NP_001080188.1  CTP synthase 1-B

    See identical proteins and their annotated locations for NP_001080188.1

    Status: PROVISIONAL

    Source sequence(s)
    BC044325
    UniProtKB/Swiss-Prot
    Q7ZXP9
    UniProtKB/TrEMBL
    A0A974DJN3, A0A974HY24, A0A9U5B9N6
    Related
    ENSXLAP00005095421.1, ENSXLAT00005097151.1
    Conserved Domains (3) summary
    cd01746
    Location:299 → 544
    GATase1_CTP_Synthase; Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase
    PLN02327
    Location:1 → 555
    PLN02327; CTP synthase
    pfam06418
    Location:2 → 272
    CTP_synth_N; CTP synthase N-terminus

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    60054951..60081420 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018244802.2 → XP_018100291.1  CTP synthase 1-B isoform X2

    UniProtKB/TrEMBL
    A0A8J0UAC3, A0A974DJN3

  2. XM_018244801.2 → XP_018100290.1  CTP synthase 1-B isoform X2

    UniProtKB/TrEMBL
    A0A8J0UAC3, A0A974DJN3
    Related
    ENSXLAP00005095634.1, ENSXLAT00005097385.1

  3. XM_018244803.2 → XP_018100292.1  CTP synthase 1-B isoform X3

    UniProtKB/Swiss-Prot
    Q7ZXP9
    UniProtKB/TrEMBL
    A0A974DJN3, A0A974HY24, A0A9U5B9N6

  4. XM_041580865.1 → XP_041436799.1  CTP synthase 1-B isoform X1

    UniProtKB/TrEMBL
    A0A8J1M537
    Conserved Domains (1) summary
    PHA03307
    Location:311 → 672
    PHA03307; transcriptional regulator ICP4; Provisional
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7ZXP9.1 GenPept UniProtKB/Swiss-Prot:Q7ZXP9

Gene LinkOut

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