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cdk17.S cyclin-dependent kinase 17 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379846, updated on 4-Nov-2024

Summary

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Official Symbol
cdk17.S
Official Full Name
cyclin-dependent kinase 17 S homeolog
Primary source
Xenbase:XB-GENE-920560
Locus tag
XELAEV_18021282mg
See related
EnsemblRapid:ENSXLAG00005014895 AllianceGenome:Xenbase:XB-GENE-920560
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
cdk17; pctk2; pctk2-a; PCTAIRE2
Summary
Predicted to enable ATP binding activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm and nucleus. Orthologous to human CDK17 (cyclin dependent kinase 17). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See cdk17.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (96791141..96914103)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (94914627..95041020)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene dynein heavy chain 3, axonemal-like Neighboring gene NEDD1 gamma-tubulin ring complex targeting factor S homeolog Neighboring gene uncharacterized LOC121402201 Neighboring gene ELK3, ETS transcription factor S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC52941

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphorylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein phosphorylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cyclin-dependent kinase 17 S homeolog
Names
PCTAIRE protein kinase 2
NP_001080154.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086685.1 → NP_001080154.1  cyclin-dependent kinase 17 S homeolog

    See identical proteins and their annotated locations for NP_001080154.1

    Status: PROVISIONAL

    Source sequence(s)
    BC043763
    UniProtKB/TrEMBL
    A0A974D8Y3, A0A974DB07, Q7ZYJ1
    Related
    ENSXLAP00005043604.1, ENSXLAT00005044675.1
    Conserved Domains (2) summary
    cd07872
    Location:162 → 470
    STKc_PCTAIRE2; Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase
    PLN00009
    Location:166 → 454
    PLN00009; cyclin-dependent kinase A; Provisional

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    96791141..96914103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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