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ap3s1.S adaptor related protein complex 3 subunit sigma 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379829, updated on 17-Aug-2024

Summary

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Official Symbol
ap3s1.S
Official Full Name
adaptor related protein complex 3 subunit sigma 1 S homeolog
Primary source
Xenbase:XB-GENE-948763
Locus tag
XELAEV_18010762mg
See related
EnsemblRapid:ENSXLAG00005007229
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ap3s1
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Genomic context

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Location:
chromosome: 1S
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (159968326..159999192, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (144017476..144048241, complement)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene ADP ribosylation factor like GTPase 14 effector protein like S homeolog Neighboring gene laeverin S homeolog Neighboring gene cysteine dioxygenase type 1 S homeolog Neighboring gene transmembrane p24 trafficking protein 7 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC52794

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within Golgi to vacuole transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of AP-3 adaptor complex IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle membrane IEA
Inferred from Electronic Annotation
more info
  
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
adaptor related protein complex 3 subunit sigma 1 S homeolog
Names
adaptor related protein complex 3 sigma 1 subunit S homeolog
adaptor-related protein complex 3, sigma 1 subunit
adaptor-related protein complex AP-3, sigma 1 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086668.1 → NP_001080137.1  adaptor related protein complex 3 subunit sigma 1 S homeolog

    See identical proteins and their annotated locations for NP_001080137.1

    Status: PROVISIONAL

    Source sequence(s)
    BC041251
    UniProtKB/TrEMBL
    A0A974DWZ5, Q8AVV3
    Related
    ENSXLAP00005020785.1, ENSXLAT00005021361.1
    Conserved Domains (1) summary
    COG5030
    Location:1 → 152
    APS2; Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    159968326..159999192 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041572996.1 → XP_041428930.1  adaptor related protein complex 3 subunit sigma 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LJQ8
    Related
    ENSXLAP00005020764.1, ENSXLAT00005021337.1
    Conserved Domains (1) summary
    cd14834
    Location:1 → 146
    AP3_sigma; AP-3 complex subunit sigma
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials