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pcbp3.S poly(rC) binding protein 3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379815, updated on 17-Aug-2024

Summary

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Official Symbol
pcbp3.S
Official Full Name
poly(rC) binding protein 3 S homeolog
Primary source
Xenbase:XB-GENE-944671
Locus tag
XELAEV_18016050mg
See related
EnsemblRapid:ENSXLAG00005032847
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pcbp3; pcbp2b; hnrnp-e2
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Genomic context

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Location:
chromosome: 2S
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (138483611..138511967, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (129488069..129516424, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene TARBP2 subunit of RISC loading complex S homeolog Neighboring gene mitogen-activated protein kinase kinase kinase 12 S homeolog Neighboring gene proline-rich protein 13 Neighboring gene anti-Mullerian hormone receptor type II S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complementary DNA analysis, expression and subcellular localization of hnRNP E2 gene in Xenopus laevis. Gravina P, et al. Gene, 2002 May 15. PMID 12062814
  2. Protein interactomes of protein phosphatase 2A B55 regulatory subunits reveal B55-mediated regulation of replication protein A under replication stress. Wang F, et al. Sci Rep, 2018 Feb 8. PMID 29422626, Free PMC Article
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC52770

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of RNA metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
poly(rC) binding protein 3 S homeolog
Names
hnRNP-E2 b
hnRNP-E2 protein copy b
poly(rC) binding protein 2 b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086654.1 → NP_001080123.1  poly(rC) binding protein 3 S homeolog

    See identical proteins and their annotated locations for NP_001080123.1

    Status: PROVISIONAL

    Source sequence(s)
    BC041241
    UniProtKB/TrEMBL
    A0A974DLN4, Q5XH78, Q8AVV9
    Related
    ENSXLAP00005098699.1, ENSXLAT00005100534.1
    Conserved Domains (2) summary
    cd00105
    Location:277 → 339
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:99 → 163
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    138483611..138511967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018248035.2 → XP_018103524.1  poly(rC) binding protein 3 S homeolog isoform X3

    UniProtKB/TrEMBL
    Q5XH78, Q7M556
    Related
    ENSXLAP00005098500.1, ENSXLAT00005100324.1

  2. XM_018248034.2 → XP_018103523.1  poly(rC) binding protein 3 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0UHT3, A0A974HZS5
    Related
    ENSXLAP00005098570.1, ENSXLAT00005100396.1

  3. XM_018248033.2 → XP_018103522.1  poly(rC) binding protein 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8HA56, A0A974DJK9, A0A974HZS5

  4. XM_018248031.2 → XP_018103520.1  poly(rC) binding protein 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8HA56, A0A974DJK9, A0A974HZS5

  5. XM_018248030.2 → XP_018103519.1  poly(rC) binding protein 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8HA56, A0A974DJK9, A0A974HZS5
    Related
    ENSXLAP00005098623.1, ENSXLAT00005100453.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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